Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040476.1-P | Field mustard | cytosol, plastid | 100.0 | 100.0 |
| CDY27511 | Canola | cytosol, plastid | 95.98 | 95.98 |
| AT2G46990.1 | Thale cress | plastid | 87.93 | 87.43 |
| CDX67874 | Canola | plastid | 79.89 | 80.35 |
| CDY25089 | Canola | plastid | 78.74 | 79.19 |
| CDY11402 | Canola | plastid | 79.89 | 78.53 |
| CDY58757 | Canola | plastid | 77.59 | 78.49 |
| CDY46895 | Canola | cytosol | 22.99 | 55.56 |
| VIT_07s0005g02550.t01 | Wine grape | plastid | 50.0 | 49.71 |
| GSMUA_Achr8P29850_001 | Banana | nucleus | 46.55 | 46.02 |
| KRH33660 | Soybean | plastid | 45.98 | 45.2 |
| KRG96613 | Soybean | plastid | 45.4 | 44.63 |
| KRH68346 | Soybean | plastid | 45.4 | 43.89 |
| KRH69143 | Soybean | plastid | 45.4 | 43.89 |
| GSMUA_Achr9P16800_001 | Banana | nucleus | 43.1 | 43.1 |
| Os01t0286900-01 | Rice | nucleus | 27.59 | 41.74 |
| CDY71609 | Canola | nucleus, plastid | 36.78 | 40.76 |
| CDX82361 | Canola | cytosol, plastid | 36.78 | 40.76 |
| CDX92140 | Canola | nucleus, plastid | 36.78 | 40.51 |
| CDX95843 | Canola | plastid | 35.63 | 40.0 |
| EES00605 | Sorghum | nucleus, plastid | 39.66 | 35.75 |
| Zm00001d008201_P001 | Maize | cytosol | 25.86 | 34.62 |
| Os02t0723400-02 | Rice | nucleus | 39.08 | 33.17 |
| Zm00001d040541_P001 | Maize | nucleus, plastid | 34.48 | 33.15 |
| TraesCS1D01G084100.1 | Wheat | nucleus, plastid | 39.08 | 32.85 |
| CDY46058 | Canola | plastid | 29.89 | 31.14 |
| TraesCS1B01G100300.1 | Wheat | plastid | 38.51 | 28.27 |
| CDX87072 | Canola | cytosol | 28.16 | 28.0 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 27.01 | 27.01 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 27.01 | 27.01 |
| CDY51701 | Canola | nucleus | 31.03 | 26.87 |
| HORVU1Hr1G017770.6 | Barley | cytosol, mitochondrion, vacuole | 31.61 | 26.57 |
| TraesCS1A01G082700.2 | Wheat | plastid | 39.66 | 26.24 |
| CDY19790 | Canola | cytosol | 27.01 | 24.1 |
| CDY38374 | Canola | nucleus | 32.18 | 23.53 |
| CDY18243 | Canola | nucleus | 31.03 | 23.38 |
| CDY35203 | Canola | nucleus | 32.18 | 23.05 |
| CDX89814 | Canola | nucleus | 31.03 | 22.98 |
| CDY53196 | Canola | nucleus | 29.89 | 22.91 |
| CDY19477 | Canola | nucleus | 29.89 | 22.13 |
| CDY17158 | Canola | nucleus | 29.89 | 22.03 |
| CDY59182 | Canola | nucleus | 28.16 | 21.78 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 33.91 | 21.77 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 33.33 | 21.4 |
| CDX79522 | Canola | nucleus | 29.31 | 20.73 |
| CDX84693 | Canola | nucleus | 28.16 | 20.25 |
| CDX87863 | Canola | nucleus | 28.16 | 19.29 |
| CDY33844 | Canola | nucleus | 27.01 | 18.58 |
| CDX75231 | Canola | nucleus | 24.14 | 18.18 |
| CDY22876 | Canola | nucleus | 26.44 | 18.18 |
| CDY46538 | Canola | nucleus | 27.01 | 17.41 |
| CDY13478 | Canola | nucleus | 24.14 | 17.28 |
| CDY53439 | Canola | nucleus | 27.01 | 17.22 |
| CDX68829 | Canola | nucleus | 22.41 | 17.11 |
| CDY34957 | Canola | nucleus | 26.44 | 17.1 |
| CDX72351 | Canola | nucleus | 24.14 | 17.0 |
| CDY64626 | Canola | cytosol | 25.86 | 16.73 |
| CDX75884 | Canola | cytosol | 25.86 | 16.61 |
| CDX82399 | Canola | nucleus | 25.86 | 16.54 |
| CDY43104 | Canola | nucleus | 25.29 | 16.48 |
| CDX92077 | Canola | nucleus | 25.29 | 15.44 |
| CDX92888 | Canola | nucleus | 33.91 | 14.57 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078IAU7 | UniProt:A0A078IAU7 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY48005 | ProteinID:CDY48005 | ProteinID:CDY48005.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00088650001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF15 | SUPFAM:SSF54277 | UniParc:UPI000254481C |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g26850DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAU7]
Coordinates
chrLK032749:-:27048..28040
Molecular Weight (calculated)
19366.6 Da
IEP (calculated)
4.624
GRAVY (calculated)
-0.436
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRSSSSS SSIESTSKSN PYGPSSSTRN LSTDLRLGLS FGASSGTPYF NGGYGYSVVD PTAEYKVAVA EEEEEENECN SVGSFYVKVN MEGVPIGRKI
101: DLMSLNGYHE LIRTLDFMFN ASILWADEEE MCGQKSHVLT YADKEGDWMM VGDVPWEMFL STVRRLKISR AYHY
101: DLMSLNGYHE LIRTLDFMFN ASILWADEEE MCGQKSHVLT YADKEGDWMM VGDVPWEMFL STVRRLKISR AYHY
001: MGRGRSSSSS SIESSSKSNP FGASSSTRNL STDLRLGLSF GTSSGTQYFN GGYGYSVAAP AVEDAEYVAA VEEEEENECN SVGSFYVKVN MEGVPIGRKI
101: DLMSLNGYRD LIRTLDFMFN ASILWAEEED MCNEKSHVLT YADKEGDWMM VGDVPWEMFL STVRRLKISR ANYHY
101: DLMSLNGYRD LIRTLDFMFN ASILWAEEED MCNEKSHVLT YADKEGDWMM VGDVPWEMFL STVRRLKISR ANYHY
Arabidopsis Description
IAA20Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A178W181]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.