Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89844 | Canola | cytosol, nucleus, plastid | 93.36 | 93.36 |
| Bra015289.1-P | Field mustard | nucleus | 92.25 | 92.25 |
| AT1G04100.1 | Thale cress | cytosol | 70.48 | 73.18 |
| CDY51701 | Canola | nucleus | 36.53 | 49.25 |
| CDY38374 | Canola | nucleus | 43.17 | 49.16 |
| CDY35203 | Canola | nucleus | 42.44 | 47.33 |
| CDY46895 | Canola | cytosol | 12.18 | 45.83 |
| CDX89814 | Canola | nucleus | 34.69 | 40.0 |
| CDY53196 | Canola | nucleus | 33.21 | 39.65 |
| CDX95843 | Canola | plastid | 22.51 | 39.35 |
| CDX92140 | Canola | nucleus, plastid | 22.88 | 39.24 |
| CDY59182 | Canola | nucleus | 32.47 | 39.11 |
| CDX79522 | Canola | nucleus | 35.42 | 39.02 |
| CDY17158 | Canola | nucleus | 33.95 | 38.98 |
| CDX84693 | Canola | nucleus | 34.69 | 38.84 |
| CDY19477 | Canola | nucleus | 33.58 | 38.72 |
| CDY71609 | Canola | nucleus, plastid | 22.14 | 38.22 |
| CDY18243 | Canola | nucleus | 32.47 | 38.1 |
| CDX82361 | Canola | cytosol, plastid | 21.03 | 36.31 |
| CDX67874 | Canola | plastid | 22.14 | 34.68 |
| CDY25089 | Canola | plastid | 21.77 | 34.1 |
| CDY58757 | Canola | plastid | 21.4 | 33.72 |
| CDY48005 | Canola | cytosol, plastid | 21.4 | 33.33 |
| CDY11402 | Canola | plastid | 21.4 | 32.77 |
| CDY27511 | Canola | cytosol, plastid | 21.03 | 32.76 |
| CDX87072 | Canola | cytosol | 20.66 | 32.0 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 19.19 | 29.89 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 19.19 | 29.89 |
| CDY46058 | Canola | plastid | 17.71 | 28.74 |
| CDY19790 | Canola | cytosol | 19.93 | 27.69 |
| CDX92888 | Canola | nucleus | 40.22 | 26.91 |
| CDY22876 | Canola | nucleus | 25.09 | 26.88 |
| CDY33844 | Canola | nucleus | 24.35 | 26.09 |
| CDX87863 | Canola | nucleus | 23.99 | 25.59 |
| CDY46538 | Canola | nucleus | 25.46 | 25.56 |
| CDY34957 | Canola | nucleus | 25.09 | 25.28 |
| CDY64626 | Canola | cytosol | 24.72 | 24.91 |
| CDY53439 | Canola | nucleus | 24.72 | 24.54 |
| CDX82399 | Canola | nucleus | 23.99 | 23.9 |
| CDX75884 | Canola | cytosol | 23.62 | 23.62 |
| CDX68829 | Canola | nucleus | 19.56 | 23.25 |
| CDY43104 | Canola | nucleus | 22.88 | 23.22 |
| CDX75231 | Canola | nucleus | 19.19 | 22.51 |
| CDX92077 | Canola | nucleus | 23.25 | 22.11 |
| CDY13478 | Canola | nucleus | 19.56 | 21.81 |
| CDX72351 | Canola | nucleus | 19.19 | 21.05 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078FUT1 | UniProt:A0A078FUT1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY18205 | ProteinID:CDY18205 | ProteinID:CDY18205.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00002734001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF48 | SUPFAM:SSF54277 | UniParc:UPI0004EDF972 |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g02280DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUT1]
Coordinates
chrLK032083:+:283504..285174
Molecular Weight (calculated)
28734.8 Da
IEP (calculated)
5.894
GRAVY (calculated)
-0.272
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGFRDVCSS SGSVNVMIGV SSPAEGEDDN AAAAALSSED SSSPDETVAG TELDLALGLS IGLNRSRNHS SKVRSFSSSL LASSSSSSPA RESGTKRSAD
101: SSAAASKGQV AVGWPPLRTY RINSLVNQAK SLPTEDGLSS NIQKDTATKN GVVAAKNDEV GFIKSPMLVK VTMDGVIIGR KIDLNAFDSY EALAKTLEQM
201: FFHTPSSLTT TRCKETRGAS ELLDVSSEYI ITYQDKDGDW MLVGDVPWLM FLGCVKRLRI MRRSGETGGG K
101: SSAAASKGQV AVGWPPLRTY RINSLVNQAK SLPTEDGLSS NIQKDTATKN GVVAAKNDEV GFIKSPMLVK VTMDGVIIGR KIDLNAFDSY EALAKTLEQM
201: FFHTPSSLTT TRCKETRGAS ELLDVSSEYI ITYQDKDGDW MLVGDVPWLM FLGCVKRLRI MRRSGETGGG K
001: MNGLQEVCSS SGSVMIGLPA EEDENAAHSS EDSSCPDESV SETELDLALG LSIGRRKVRS SLSSSSSSLT RESGTKRSAD SSPAAASNAT RQVAVGWPPL
101: RTYRINSLVN QAKSLATEGG LSSGIQKETT KSVVVAAKND DACFIKSSRT SMLVKVTMDG VIIGRKVDLN ALDSYAALEK TLDLMFFQIP SPVTRSNTQG
201: YKTIKETCTS KLLDGSSEYI ITYQDKDGDW MLVGDVPWQM FLGSVTRLRI MKTSIGAGVG K
101: RTYRINSLVN QAKSLATEGG LSSGIQKETT KSVVVAAKND DACFIKSSRT SMLVKVTMDG VIIGRKVDLN ALDSYAALEK TLDLMFFQIP SPVTRSNTQG
201: YKTIKETCTS KLLDGSSEYI ITYQDKDGDW MLVGDVPWQM FLGSVTRLRI MKTSIGAGVG K
Arabidopsis Description
IAA10Auxin-responsive protein IAA10 [Source:UniProtKB/Swiss-Prot;Acc:Q38828]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.