CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 25255860

msms PMID: 25255860 doi

RK Tewari, M Satoh, S Kado, K Mishina, M Anma, K Enami, M Hanaoka, M Watanabe

Laboratory of Plant Nutrition, Faculty of Horticulture, Chiba University, 648 Matsudo, Chiba, 271-8510, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75884
CDX80545
CDX82399
CDX83741
CDX87072
CDX87863
CDX88204
CDX92077
CDX94484
CDX94528
CDX94748
CDX94777
CDY01393
CDY08767
CDY18679
CDY19790
CDY21993
CDY22876
CDY24162
CDY24168
CDY29392
CDY33844
CDY34957
CDY36883
CDY36940
CDY39348
CDY41720
CDY43104
CDY45607
CDY46538
CDY48583
CDY49005
CDY53305
CDY53439
CDY53570
CDY53735
CDY54111
CDY55738
CDY61164
CDY62586
CDY64626
CDY67714
CDY68170
CDY69758

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65670.1	CDY53305	AT1G15580.1	21734647
AT5G65670.1	CDX83741	AT1G19850.1	22096563
AT5G65670.1	CDY01393	AT1G19850.1	22096563
AT5G65670.1	CDY29392	AT1G19850.1	22096563
AT5G65670.1	CDY39348	AT1G19850.1	22096563
AT5G65670.1	CDY61164	AT1G19850.1	22096563
AT5G65670.1	CDY62586	AT1G19850.1	22096563
AT5G65670.1	CDX94484	AT1G34390.1	21734647
AT5G65670.1	CDX94528	AT1G34390.1	21734647
AT5G65670.1	CDX94748	AT1G34390.1	21734647
AT5G65670.1	CDX94777	AT1G34390.1	21734647
AT5G65670.1	CDY21993	AT1G34390.1	21734647
AT5G65670.1	CDY24162	AT1G34390.1	21734647
AT5G65670.1	CDY24168	AT1G34390.1	21734647
AT5G65670.1	CDY36940	AT1G34390.1	21734647
AT5G65670.1	CDY41720	AT1G34390.1	21734647
AT5G65670.1	CDY48583	AT1G34390.1	21734647
AT5G65670.1	CDY49005	AT1G34390.1	21734647
AT5G65670.1	CDY53570	AT1G34390.1	21734647
AT5G65670.1	CDY54111	AT1G34390.1	21734647
AT5G65670.1	CDY55738	AT1G34390.1	21734647
AT5G65670.1	CDY67714	AT1G34390.1	21734647
AT5G65670.1	CDY69758	AT1G34390.1	21734647
AT5G65670.1	CDX87863	AT1G51950.1	21734647
AT5G65670.1	CDY22876	AT1G51950.1	21734647
AT5G65670.1	CDY33844	AT1G51950.1	21734647
AT5G65670.1	CDY46538	AT1G51950.1	21734647
AT5G65670.1	CDY53439	AT1G51950.1	21734647
AT5G65670.1	CDX75884	AT3G16500.1	21734647
AT5G65670.1	CDX82399	AT3G16500.1	21734647
AT5G65670.1	CDX92077	AT3G16500.1	21734647
AT5G65670.1	CDY34957	AT3G16500.1	21734647
AT5G65670.1	CDY43104	AT3G16500.1	21734647
AT5G65670.1	CDY64626	AT3G16500.1	21734647
AT5G65670.1	CDY36883	AT4G14560.1	21734647
AT5G65670.1	CDY53735	AT4G14560.1	21734647
AT5G65670.1	CDY36883	AT4G14560.1	9342315
AT5G65670.1	CDY53735	AT4G14560.1	9342315
AT5G65670.1	CDX80545	AT5G25890.1	21734647
AT5G65670.1	CDX87072	AT5G25890.1	21734647
AT5G65670.1	CDX88204	AT5G25890.1	21734647
AT5G65670.1	CDY19790	AT5G25890.1	21734647
AT5G65670.1	CDY08767	AT5G65670.1	21734647
AT5G65670.1	CDY18679	AT5G65670.1	21734647
AT5G65670.1	CDY45607	AT5G65670.1	21734647
AT5G65670.1	CDY68170	AT5G65670.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037824.1-P	Field mustard	plastid	61.22	97.95
CDY68170	Canola	nucleus, plastid	91.03	91.32
AT5G65670.1	Thale cress	nucleus	89.74	82.84
CDY45607	Canola	cytosol, nucleus, plastid	83.33	79.03
CDY08767	Canola	cytosol, nucleus, plastid	83.33	78.31
CDY37837	Canola	mitochondrion	73.08	77.03
CDY40881	Canola	cytosol	44.23	75.41
CDY50113	Canola	cytosol, nucleus, plastid	41.35	71.27
CDY66936	Canola	cytosol, nucleus, plastid	59.94	67.75
CDY25617	Canola	nucleus	51.28	60.15
CDX89499	Canola	nucleus	50.64	58.3
CDY10694	Canola	mitochondrion	30.77	55.17
CDX94876	Canola	nucleus	29.17	53.22
CDY10692	Canola	nucleus	29.17	52.91
CDY40837	Canola	nucleus	28.85	52.63
CDY35493	Canola	nucleus	28.85	52.63
CDX92972	Canola	nucleus	28.85	52.63
CDY10346	Canola	nucleus	28.85	52.33
CDY32536	Canola	cytosol, nucleus, plastid	29.49	51.11
CDY36883	Canola	nucleus	27.88	50.58
CDY15493	Canola	cytosol, nucleus, plastid	36.86	50.22
CDY53735	Canola	nucleus	27.56	50.0
CDY10069	Canola	nucleus	29.49	50.0
CDX89832	Canola	nucleus	35.58	49.55
CDY18214	Canola	nucleus	35.58	49.55
CDY10068	Canola	cytosol, nucleus, plastid	35.9	49.12
CDY32537	Canola	nucleus	35.9	49.12
CDX89833	Canola	cytosol, nucleus, plastid	29.17	48.92
CDY41894	Canola	cytosol, nucleus, plastid	36.22	48.92
CDY06836	Canola	nucleus	39.42	48.81
CDY21111	Canola	cytosol, nucleus, plastid	36.86	48.73
CDY18213	Canola	cytosol, nucleus, plastid	28.85	48.39
CDX92973	Canola	cytosol, nucleus, plastid	36.54	48.1
CDY62130	Canola	cytosol, nucleus, plastid	35.9	48.07
CDY47148	Canola	nucleus	35.9	48.07
CDY10349	Canola	endoplasmic reticulum, extracellular	37.82	47.97
CDY30781	Canola	cytosol, nucleus, plastid	36.86	47.92
CDY63910	Canola	cytosol, nucleus, plastid	36.86	47.92
CDY32934	Canola	cytosol, nucleus, plastid	29.17	47.64
CDY30017	Canola	cytosol, nucleus, plastid	35.9	47.26
CDY69497	Canola	cytosol, nucleus, plastid	28.85	47.12
CDY53305	Canola	cytosol	23.4	46.5
CDX82428	Canola	cytosol, nucleus, plastid	28.53	45.88
CDX75834	Canola	cytosol, nucleus, plastid	28.53	45.88
CDY21845	Canola	cytosol, extracellular, nucleus	28.21	44.67
CDY20135	Canola	cytosol, nucleus, plastid	28.21	44.67
CDY68807	Canola	nucleus	27.24	43.37
CDY71748	Canola	cytosol, nucleus, plastid	23.72	42.77
CDY26042	Canola	nucleus	26.6	42.35
CDY53800	Canola	nucleus	24.68	40.96
CDY50750	Canola	nucleus, plastid	37.18	39.86
CDY63072	Canola	nucleus	36.54	28.64

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	GO:A0A078FZR2	UniProt:A0A078FZR2	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
EnsemblPlants:CDY18679	ProteinID:CDY18679	ProteinID:CDY18679.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00005756001	InterPro:IPR000270	InterPro:PB1_dom
PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF24	SUPFAM:SSF54277	UniParc:UPI0004EDE773
SEG:seg	:	:	:	:	:

Description

BnaA09g07160DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZR2]

Coordinates

chrLK032087:-:451056..453009

Molecular Weight (calculated)

33824.1 Da

IEP (calculated)

8.334

GRAVY (calculated)

-0.487

Length

312 amino acids

Sequence
(BLAST)

001: MLSEEELQSN VSLASSSPTS NCISKGGGLK VHNYFGLSDS SSVESSTLSC GEDDKGTISL KATELTLGLP GSQSPARDTK LDEKPFFPLL PSKDEICSSS
101: HKNKRGFSDT IYTEKNWMFP EAVANQSVVK KEVTTNIPKG QLSTTNNSSS PPAAKAQIVG WPPVRSYRKN TLATTCKNSD EVDGKPGSAA LFVKVSMDGA
201: PYLRKVDLRS YGKYGELSSA LEKMFTTFTL GQCGSNGAAG KDMLRETKLK DFLNGKDYVL TYEDKDGDWM LVGDVPWEMF IDVCKKLKIM KGADAIGLTS
301: APRGMEKSKM RA

Best Arabidopsis Sequence Match ( AT5G65670.1 )
(BLAST)

001: MSPEEELQSN VSVASSSPTS NCISRNTLGG LKEHNYLGLS DCSSVGSSTL SPLAEDDKAT ISLKATELTL GLPGSQSPAR DTELNLLSPA KLDEKPFFPL
101: LPSKDEICSS SQKNNASGNK RGFSDTMDQF AEAKSSVYTE KNWMFPEAAA TQSVTKKDVP QNIPKGQSST TNNSSSPPAA KAQIVGWPPV RSYRKNTLAT
201: TCKNSDEVDG RPGSGALFVK VSMDGAPYLR KVDLRSYTNY GELSSALEKM FTTFTLGQCG SNGAAGKDML SETKLKDLLN GKDYVLTYED KDGDWMLVGD
301: VPWEMFIDVC KKLKIMKGCD AIGLAAAPRA MEKSKMRA

Arabidopsis Description

IAA9Auxin-responsive protein IAA9 [Source:UniProtKB/Swiss-Prot;Acc:Q38827]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.