Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15493 | Canola | cytosol, nucleus, plastid | 54.77 | 95.2 |
| CDX89832 | Canola | nucleus | 49.25 | 87.5 |
| CDY32537 | Canola | nucleus | 50.0 | 87.28 |
| CDY18214 | Canola | nucleus | 48.74 | 86.61 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 49.75 | 86.46 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 49.5 | 86.4 |
| CDY47148 | Canola | nucleus | 39.2 | 66.95 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 38.69 | 66.09 |
| KRH34377 | Soybean | nucleus | 39.45 | 65.69 |
| CDY10694 | Canola | mitochondrion | 28.64 | 65.52 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 39.7 | 65.02 |
| Solyc09g083290.2.1 | Tomato | nucleus | 38.19 | 64.41 |
| PGSC0003DMT400015610 | Potato | nucleus | 37.94 | 63.45 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 38.19 | 63.33 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 38.19 | 63.33 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 37.69 | 63.29 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 35.43 | 61.04 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 37.69 | 60.98 |
| GSMUA_Achr10P... | Banana | nucleus | 36.43 | 60.17 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 35.68 | 58.2 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 34.42 | 58.05 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 35.43 | 58.02 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 33.92 | 56.96 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 35.43 | 56.85 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 32.66 | 53.94 |
| CDX92972 | Canola | nucleus | 22.86 | 53.22 |
| CDX94876 | Canola | nucleus | 22.86 | 53.22 |
| EER90896 | Sorghum | nucleus | 31.41 | 53.19 |
| CDY10692 | Canola | nucleus | 22.86 | 52.91 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 33.42 | 52.78 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 33.42 | 52.78 |
| Zm00001d033976_P002 | Maize | nucleus | 31.41 | 52.74 |
| CDY35493 | Canola | nucleus | 22.61 | 52.63 |
| CDY40837 | Canola | nucleus | 22.61 | 52.63 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 33.42 | 52.57 |
| CDY10346 | Canola | nucleus | 22.61 | 52.33 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 29.9 | 51.29 |
| Os03t0742900-01 | Rice | vacuole | 30.4 | 51.27 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 29.9 | 51.07 |
| Os03t0633500-01 | Rice | cytosol | 29.9 | 51.07 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 29.9 | 50.85 |
| Zm00001d013302_P002 | Maize | nucleus | 28.89 | 50.44 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 23.37 | 50.0 |
| CDY50750 | Canola | nucleus, plastid | 36.43 | 49.83 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 31.66 | 49.8 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 31.66 | 49.8 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 29.65 | 49.79 |
| CDY36883 | Canola | nucleus | 21.36 | 49.42 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 23.62 | 49.21 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 23.62 | 49.21 |
| EES17334 | Sorghum | cytosol | 34.67 | 49.11 |
| CDY53735 | Canola | nucleus | 21.11 | 48.84 |
| Os12t0601300-01 | Rice | nucleus | 33.92 | 48.74 |
| CDY40881 | Canola | cytosol | 22.36 | 48.63 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 32.16 | 48.48 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 40.2 | 48.34 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 21.86 | 48.33 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 33.42 | 48.19 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 22.36 | 47.85 |
| CDY53305 | Canola | cytosol | 18.84 | 47.77 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 23.12 | 47.42 |
| CDY10069 | Canola | nucleus | 21.61 | 46.74 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 22.36 | 45.88 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 20.85 | 45.86 |
| CDY06836 | Canola | nucleus | 27.39 | 43.25 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 21.36 | 43.15 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 21.36 | 43.15 |
| CDY68807 | Canola | nucleus | 21.11 | 42.86 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 30.15 | 42.7 |
| CDY26042 | Canola | nucleus | 20.85 | 42.35 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 18.09 | 41.62 |
| CDY25617 | Canola | nucleus | 26.63 | 39.85 |
| CDY53800 | Canola | nucleus | 18.59 | 39.36 |
| CDX89499 | Canola | nucleus | 26.13 | 38.38 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 29.4 | 38.36 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 30.15 | 38.1 |
| CDY37837 | Canola | mitochondrion | 28.14 | 37.84 |
| CDY68170 | Canola | nucleus, plastid | 29.15 | 37.3 |
| Zm00001d041416_P001 | Maize | nucleus | 31.91 | 36.92 |
| CDY18679 | Canola | plastid | 28.64 | 36.54 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 28.64 | 34.65 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 28.89 | 34.64 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 23.87 | 34.42 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078J8B8 | UniProt:A0A078J8B8 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY63072 | ProteinID:CDY63072 | ProteinID:CDY63072.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00037898001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 | UniParc:UPI0004EC087B |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng41350DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8B8]
Coordinates
chrLK034240:+:29663..32777
Molecular Weight (calculated)
43490.7 Da
IEP (calculated)
8.341
GRAVY (calculated)
-0.649
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MKELKQAFGN KPEKTPLAIG RGYGSKNVAS KEEDDRNKVL SGEPTGGAPL GGLLDSSLPG DGEVELVDLE RNSISGSKIL TEMTPSLVLR QPEEGTTGSE
101: PEDQSKAAVR EPSRLIAGGG TKRRRRIAGS STTKSRLCHS VSLPSRFHRN RTEEEKHWKE ERLAMMGSVG LNLRETELCL GLPGGDTASP VTGTKRGFSE
201: TVDLKLNLNS EPESKEGSKS HDVVSAVFKE KSSCPKDPTK PLAKAQVVGW PPVRSYRKNV MGSCQKSSSS AETAAFVKVS MDGAPYLRKV DLKMYKSYDE
301: LSDALSNMFS SFTMGNNGGE EGMIDFMNER KVMDTVSSWD YVPSYEDKDG DWMLVGDVPW PMFVDTCKRL RLMKGSDAIG LAPRAMEKCK STSLKLKD
101: PEDQSKAAVR EPSRLIAGGG TKRRRRIAGS STTKSRLCHS VSLPSRFHRN RTEEEKHWKE ERLAMMGSVG LNLRETELCL GLPGGDTASP VTGTKRGFSE
201: TVDLKLNLNS EPESKEGSKS HDVVSAVFKE KSSCPKDPTK PLAKAQVVGW PPVRSYRKNV MGSCQKSSSS AETAAFVKVS MDGAPYLRKV DLKMYKSYDE
301: LSDALSNMFS SFTMGNNGGE EGMIDFMNER KVMDTVSSWD YVPSYEDKDG DWMLVGDVPW PMFVDTCKRL RLMKGSDAIG LAPRAMEKCK STSLKLKD
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.