Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032520.1-P | Field mustard | nucleus | 89.08 | 89.87 |
| CDY32537 | Canola | nucleus | 89.08 | 89.47 |
| Bra030560.1-P | Field mustard | nucleus | 89.08 | 89.08 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 88.21 | 88.6 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 88.21 | 88.21 |
| CDX89832 | Canola | nucleus | 84.72 | 86.61 |
| Bra015298.1-P | Field mustard | nucleus | 84.28 | 86.16 |
| CDY18214 | Canola | nucleus | 83.41 | 85.27 |
| KRH34377 | Soybean | nucleus | 69.0 | 66.11 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 69.0 | 65.02 |
| Solyc09g083290.2.1 | Tomato | nucleus | 66.81 | 64.83 |
| AT4G14550.2 | Thale cress | nucleus | 65.5 | 64.1 |
| PGSC0003DMT400015610 | Potato | nucleus | 66.38 | 63.87 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 67.25 | 63.37 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 62.01 | 60.17 |
| GSMUA_Achr10P... | Banana | nucleus | 62.01 | 58.92 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 61.14 | 57.38 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 61.14 | 56.45 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 59.83 | 56.38 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 59.39 | 53.97 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 59.39 | 53.97 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 59.39 | 53.75 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 56.33 | 53.53 |
| Os03t0633500-01 | Rice | cytosol | 53.71 | 52.79 |
| AT4G14560.1 | Thale cress | nucleus | 38.43 | 52.38 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 42.36 | 52.15 |
| EER90896 | Sorghum | nucleus | 52.84 | 51.49 |
| Zm00001d033976_P002 | Maize | nucleus | 53.28 | 51.48 |
| Os03t0742900-01 | Rice | vacuole | 51.97 | 50.42 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 55.02 | 49.8 |
| CDY63072 | Canola | nucleus | 86.46 | 49.75 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 50.22 | 49.57 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 50.22 | 49.36 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 50.22 | 49.15 |
| Zm00001d013302_P002 | Maize | nucleus | 48.91 | 49.12 |
| EES17334 | Sorghum | cytosol | 60.26 | 49.11 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 50.66 | 48.95 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 58.95 | 48.91 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 53.71 | 48.62 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 55.9 | 48.48 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 69.87 | 48.34 |
| Os12t0601300-01 | Rice | nucleus | 58.08 | 48.01 |
| AT1G15580.1 | Thale cress | nucleus | 33.62 | 47.24 |
| AT3G15540.1 | Thale cress | nucleus | 39.3 | 45.69 |
| AT1G52830.1 | Thale cress | nucleus | 34.5 | 41.8 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 50.66 | 41.28 |
| AT4G29080.1 | Thale cress | nucleus | 51.97 | 39.02 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 51.97 | 37.78 |
| Zm00001d041416_P001 | Maize | nucleus | 56.33 | 37.5 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 49.34 | 37.05 |
| AT5G65670.1 | Thale cress | nucleus | 53.71 | 36.39 |
| AT3G23030.2 | Thale cress | vacuole | 40.17 | 35.25 |
| AT2G22670.4 | Thale cress | nucleus | 50.66 | 34.32 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 41.92 | 33.22 |
Protein Annotations
| PDB:2MUK | Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:839568 | UniProt:A0A178WIK9 | ProteinID:AAB70451.2 |
| ProteinID:AAC39439.1 | ProteinID:AAC39440.1 | ProteinID:AEE27674.1 | EMBL:AF336916 | ArrayExpress:AT1G04250 | EnsemblPlantsGene:AT1G04250 |
| RefSeq:AT1G04250 | TAIR:AT1G04250 | RefSeq:AT1G04250-TAIR-G | EnsemblPlants:AT1G04250.1 | TAIR:AT1G04250.1 | InterPro:AUX/IAA_dom |
| InterPro:AUX_IAA | Symbol:AXR3 | EMBL:AY070094 | EMBL:AY087284 | EMBL:AY117183 | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 |
| GO:GO:0009734 | GO:GO:0009987 | GO:GO:0042802 | GO:GO:1900057 | InterPro:IPR000270 | RefSeq:NP_171921.1 |
| ProteinID:OAP18096.1 | UniProt:P93830 | InterPro:PB1_dom | PFAM:PF02309 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 | EMBL:U49073 | UniParc:UPI00000017D6 |
| SEG:seg | : | : | : | : | : |
Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
Coordinates
chr1:+:1136078..1138663
Molecular Weight (calculated)
25289.4 Da
IEP (calculated)
7.247
GRAVY (calculated)
-0.477
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.