Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89833 | Canola | cytosol, nucleus, plastid | 55.71 | 86.56 |
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 55.71 | 86.56 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 53.63 | 86.11 |
| Bra032521.1-P | Field mustard | nucleus | 52.94 | 85.0 |
| CDY10069 | Canola | nucleus | 53.98 | 84.78 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 53.98 | 83.87 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 50.52 | 78.49 |
| KRH34375 | Soybean | cytosol, nucleus | 32.18 | 76.23 |
| AT4G14560.1 | Thale cress | nucleus | 38.06 | 65.48 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 41.87 | 63.68 |
| Solyc06g053840.2.1 | Tomato | nucleus | 41.87 | 63.68 |
| Solyc09g083280.2.1 | Tomato | nucleus | 42.91 | 63.27 |
| PGSC0003DMT400015655 | Potato | nucleus | 42.56 | 63.08 |
| KRG92430 | Soybean | nucleus | 41.18 | 61.34 |
| KRH69048 | Soybean | nucleus | 39.79 | 59.9 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 33.56 | 59.15 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 34.26 | 58.93 |
| Solyc04g054280.1.1 | Tomato | nucleus | 33.56 | 58.43 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 25.26 | 58.4 |
| GSMUA_Achr9P10690_001 | Banana | cytosol, mitochondrion, nucleus | 27.34 | 58.09 |
| GSMUA_Achr5P03110_001 | Banana | nucleus | 33.56 | 57.74 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 32.53 | 54.97 |
| GSMUA_Achr4P22530_001 | Banana | nucleus | 33.22 | 53.04 |
| GSMUA_Achr11P... | Banana | nucleus | 31.49 | 52.3 |
| GSMUA_Achr4P21030_001 | Banana | nucleus | 34.95 | 51.01 |
| GSMUA_Achr8P20620_001 | Banana | nucleus | 32.87 | 50.53 |
| Os12t0601400-01 | Rice | nucleus | 32.87 | 48.22 |
| TraesCS5A01G058700.1 | Wheat | cytosol | 34.95 | 47.2 |
| TraesCS5B01G058800.1 | Wheat | cytosol | 34.95 | 47.2 |
| TraesCS5D01G069200.1 | Wheat | cytosol | 34.95 | 47.2 |
| GSMUA_Achr2P12630_001 | Banana | nucleus | 32.87 | 46.8 |
| EER98076 | Sorghum | cytosol, mitochondrion, nucleus | 32.18 | 46.73 |
| AT1G15580.1 | Thale cress | nucleus | 25.95 | 46.01 |
| Zm00001d013071_P001 | Maize | nucleus | 28.72 | 45.86 |
| Zm00001d018973_P001 | Maize | nucleus | 31.14 | 44.55 |
| TraesCS5D01G449400.1 | Wheat | nucleus | 27.68 | 44.2 |
| EER90734 | Sorghum | cytosol, nucleus, plastid | 28.37 | 44.09 |
| TraesCS5B01G446100.1 | Wheat | cytosol, mitochondrion, nucleus | 26.99 | 44.07 |
| AT3G23030.2 | Thale cress | vacuole | 39.1 | 43.3 |
| AT3G15540.1 | Thale cress | nucleus | 29.41 | 43.15 |
| Zm00001d041418_P001 | Maize | nucleus | 34.26 | 43.04 |
| TraesCS5D01G388200.1 | Wheat | nucleus | 31.83 | 42.79 |
| EER93778 | Sorghum | cytosol, nucleus, plastid | 32.87 | 42.04 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 34.26 | 41.95 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 33.22 | 41.92 |
| Zm00001d013707_P001 | Maize | nucleus | 32.18 | 41.52 |
| TraesCS5B01G381800.1 | Wheat | nucleus | 30.45 | 41.51 |
| TraesCS5A01G378200.1 | Wheat | nucleus | 30.45 | 41.51 |
| Os03t0797800-01 | Rice | nucleus | 28.03 | 41.12 |
| EES16315 | Sorghum | cytosol | 34.6 | 40.98 |
| AT1G52830.1 | Thale cress | nucleus | 26.64 | 40.74 |
| AT4G14550.2 | Thale cress | nucleus | 32.87 | 40.6 |
| Os03t0633800-01 | Rice | nucleus | 31.49 | 40.27 |
| Os07t0182400-01 | Rice | plastid | 30.45 | 40.18 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 33.56 | 39.92 |
| Zm00001d033319_P001 | Maize | nucleus | 31.14 | 39.82 |
| Zm00001d030993_P001 | Maize | nucleus | 26.64 | 38.69 |
| HORVU5Hr1G106350.2 | Barley | plastid | 28.03 | 36.0 |
| HORVU5Hr1G014290.1 | Barley | mitochondrion | 30.1 | 33.98 |
| AT4G29080.1 | Thale cress | nucleus | 34.26 | 32.46 |
| HORVU5Hr1G093640.1 | Barley | mitochondrion | 32.87 | 30.25 |
| AT5G65670.1 | Thale cress | nucleus | 33.22 | 28.4 |
| AT2G22670.4 | Thale cress | nucleus | 31.49 | 26.92 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 28.37 | 25.62 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:839570 | UniProt:A0A1P8AT43 | ProteinID:ANM59833.1 | ArrayExpress:AT1G04240 |
| EnsemblPlantsGene:AT1G04240 | RefSeq:AT1G04240 | TAIR:AT1G04240 | RefSeq:AT1G04240-TAIR-G | EnsemblPlants:AT1G04240.2 | InterPro:AUX/IAA_dom |
| InterPro:AUX_IAA | Unigene:At.20801 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | RefSeq:NP_001322162.1 | InterPro:PB1_dom | PFAM:PF02309 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF11 | Symbol:SHY2 | SUPFAM:SSF54277 | UniParc:UPI000848A546 |
| SEG:seg | : | : | : | : | : |
Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
Coordinates
chr1:-:1128149..1129689
Molecular Weight (calculated)
32515.2 Da
IEP (calculated)
8.366
GRAVY (calculated)
-0.313
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEKESVPTN VPKKMGHTFA SKLLLLLPTS LAFFPLSLIQ KTVSSLSTSI YLYSPLTCIK HSASSKPLIF IISSFSISLL SFKDNNQKLF FLSSPAILEE
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.