Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25203637
|
gfp PMID:
25203637
doi
Center for Plant Molecular Biology (ZMBP), Central Facilities, University of Tübingen, Tübingen, Germany., Institute for Crop Science, Bioinformatics Unit, University of Hohenheim, Stuttgart, Germany., Institute of Crop Science and Resource Conservation (INRES), Crop Functional Genomics, University of Bonn, Bonn, Germany., Institute of Crop Science and Resource Conservation (INRES), Crop Functional Genomics, University of Bonn, Bonn, Germany; College of Resources and Environment (RCBB), Southwest University, Chongqing, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033319_P001 | Maize | nucleus | 79.02 | 78.32 |
| EER93778 | Sorghum | cytosol, nucleus, plastid | 77.68 | 76.99 |
| Os03t0633800-01 | Rice | nucleus | 63.84 | 63.27 |
| TraesCS5D01G388200.1 | Wheat | nucleus | 58.04 | 60.47 |
| TraesCS5B01G381800.1 | Wheat | nucleus | 55.36 | 58.49 |
| TraesCS5A01G378200.1 | Wheat | nucleus | 54.91 | 58.02 |
| KRH34375 | Soybean | cytosol, nucleus | 30.8 | 56.56 |
| Zm00001d041418_P001 | Maize | nucleus | 57.59 | 56.09 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 29.91 | 53.6 |
| PGSC0003DMT400051896 | Potato | plastid | 36.61 | 53.59 |
| Zm00001d030993_P001 | Maize | nucleus | 46.88 | 52.76 |
| Solyc06g084070.2.1 | Tomato | nucleus, plastid | 36.16 | 51.92 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 42.86 | 51.61 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 45.54 | 51.26 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 38.84 | 50.88 |
| Solyc04g054280.1.1 | Tomato | nucleus | 37.5 | 50.6 |
| AT4G14560.1 | Thale cress | nucleus | 37.95 | 50.6 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 41.96 | 50.54 |
| Solyc06g053840.2.1 | Tomato | nucleus | 42.86 | 50.53 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 42.86 | 50.53 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 42.86 | 50.26 |
| Zm00001d018973_P001 | Maize | nucleus | 45.09 | 50.0 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 37.5 | 50.0 |
| CDY36883 | Canola | nucleus | 38.39 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 38.84 | 50.0 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 42.41 | 49.74 |
| Solyc09g083280.2.1 | Tomato | nucleus | 43.3 | 49.49 |
| PGSC0003DMT400015655 | Potato | nucleus | 42.86 | 49.23 |
| Bra027504.1-P | Field mustard | nucleus | 41.96 | 49.21 |
| Zm00001d013071_P001 | Maize | nucleus | 39.73 | 49.17 |
| KRH71338 | Soybean | nucleus | 44.2 | 49.01 |
| CDY53735 | Canola | nucleus | 37.5 | 48.84 |
| KRG92430 | Soybean | nucleus | 41.96 | 48.45 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 40.18 | 48.39 |
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 40.18 | 48.39 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 38.84 | 48.33 |
| PGSC0003DMT400049677 | Potato | nucleus | 39.29 | 48.09 |
| Bra001899.1-P | Field mustard | nucleus | 36.61 | 47.95 |
| CDX92972 | Canola | nucleus | 36.61 | 47.95 |
| CDX94876 | Canola | nucleus | 36.61 | 47.95 |
| Bra032521.1-P | Field mustard | nucleus | 38.39 | 47.78 |
| KRH69048 | Soybean | nucleus | 40.62 | 47.4 |
| Bra023771.1-P | Field mustard | nucleus | 36.16 | 47.37 |
| Bra039732.1-P | Field mustard | nucleus | 36.16 | 47.37 |
| CDY35493 | Canola | nucleus | 36.16 | 47.37 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 39.29 | 47.31 |
| CDY10069 | Canola | nucleus | 38.84 | 47.28 |
| CDY10692 | Canola | nucleus | 36.16 | 47.09 |
| Bra033890.1-P | Field mustard | nucleus | 36.16 | 47.09 |
| Solyc09g065850.2.1 | Tomato | nucleus | 38.84 | 47.03 |
| CDY40837 | Canola | nucleus | 35.71 | 46.78 |
| CDY10346 | Canola | nucleus | 35.71 | 46.51 |
| KRH32098 | Soybean | nucleus | 35.71 | 45.98 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 33.04 | 45.12 |
| PGSC0003DMT400013662 | Potato | cytosol | 37.95 | 44.74 |
| Solyc06g008580.2.1 | Tomato | nucleus | 37.5 | 44.21 |
| KRG95613 | Soybean | nucleus | 38.84 | 42.65 |
| KRH67288 | Soybean | nucleus | 38.84 | 42.23 |
| HORVU5Hr1G093640.1 | Barley | mitochondrion | 57.59 | 41.08 |
| Zm00001d033976_P002 | Maize | nucleus | 39.73 | 37.55 |
| Zm00001d037774_P001 | Maize | cytosol | 39.73 | 36.48 |
| Zm00001d013302_P002 | Maize | nucleus | 36.61 | 35.96 |
| Zm00001d039624_P001 | Maize | nucleus | 33.93 | 34.55 |
| Zm00001d036918_P001 | Maize | nucleus | 30.36 | 34.34 |
| Zm00001d008749_P002 | Maize | cytosol | 33.04 | 33.79 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 41.52 | 32.18 |
| AT3G23030.2 | Thale cress | vacuole | 36.16 | 31.03 |
| Zm00001d043878_P001 | Maize | nucleus, plastid | 36.16 | 30.11 |
| Zm00001d009532_P001 | Maize | nucleus | 36.61 | 29.18 |
| Zm00001d038980_P001 | Maize | cytosol, nucleus, plastid | 37.05 | 28.72 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 39.73 | 27.81 |
| Zm00001d010411_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 39.29 | 26.75 |
| Zm00001d041416_P001 | Maize | nucleus | 40.62 | 26.45 |
| Zm00001d011588_P003 | Maize | nucleus, plastid | 35.27 | 23.17 |
| Zm00001d024008_P001 | Maize | mitochondrion | 29.46 | 18.97 |
Protein Annotations
| EntrezGene:100274141 | Gene3D:3.10.20.90 | MapMan:35.1 | ProteinID:AQK64192.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| UniProt:B8A178 | EMBL:BT055320 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | EMBL:KJ727833 | InterPro:PB1_dom | PFAM:PF02309 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF25 | SUPFAM:SSF54277 | UniParc:UPI0001917557 | EnsemblPlantsGene:Zm00001d013707 |
| EnsemblPlants:Zm00001d013707_P001 | EnsemblPlants:Zm00001d013707_T001 | SEG:seg | : | : | : |
Description
Aux/IAA-transcription factor 22Auxin-responsive protein IAA4
Coordinates
chr5:-:18196300..18197763
Molecular Weight (calculated)
23879.1 Da
IEP (calculated)
8.609
GRAVY (calculated)
-0.510
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: METVVGDLMA TELRLGLPGT VDDCSQHQQQ TQLKVAAPPS NPTRGKKRPA AEEEEANKRD AEAAPPAAKA PVVGWPPVRS YRKSCFQQAK QQAVSSSSKA
101: ADKEDAAAPA PSCTASAAAS NATASAGAGS FVKVSMDGAP YLRKLDLRMY KGYRELREAL EAMFVSSGSA NNNNNLSEFA VTYQDKDGDL MLVGDVPFEM
201: FASTCRKLRI MKRSEATGLG SARQ
101: ADKEDAAAPA PSCTASAAAS NATASAGAGS FVKVSMDGAP YLRKLDLRMY KGYRELREAL EAMFVSSGSA NNNNNLSEFA VTYQDKDGDL MLVGDVPFEM
201: FASTCRKLRI MKRSEATGLG SARQ
001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.