Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77659 | Sorghum | nucleus | 94.67 | 92.77 |
| Os05t0230700-01 | Rice | nucleus | 86.89 | 82.49 |
| Zm00001d010411_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 88.52 | 65.65 |
| GSMUA_Achr10P... | Banana | nucleus | 63.93 | 56.12 |
| GSMUA_Achr7P10930_001 | Banana | nucleus | 59.43 | 54.31 |
| GSMUA_Achr9P06290_001 | Banana | nucleus | 60.66 | 54.01 |
| GSMUA_Achr6P26730_001 | Banana | nucleus | 60.66 | 53.05 |
| GSMUA_Achr2P09210_001 | Banana | nucleus | 51.64 | 50.81 |
| PGSC0003DMT400006548 | Potato | plastid | 53.69 | 50.19 |
| Solyc03g120500.2.1 | Tomato | nucleus | 56.97 | 50.0 |
| KRH23426 | Soybean | nucleus | 61.48 | 48.86 |
| KRH09902 | Soybean | nucleus | 62.3 | 47.65 |
| PGSC0003DMT400001013 | Potato | nucleus | 54.1 | 47.31 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 61.07 | 46.56 |
| Zm00001d013302_P002 | Maize | nucleus | 43.44 | 46.49 |
| Zm00001d033976_P002 | Maize | nucleus | 45.08 | 46.41 |
| KRH60250 | Soybean | nucleus | 54.1 | 45.99 |
| KRH74730 | Soybean | plastid | 30.33 | 45.96 |
| Solyc12g007230.1.1 | Tomato | nucleus | 55.33 | 45.76 |
| CDY06836 | Canola | nucleus | 47.13 | 45.63 |
| Bra011082.1-P | Field mustard | nucleus | 54.1 | 45.52 |
| Zm00001d043878_P001 | Maize | nucleus, plastid | 50.0 | 45.35 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 59.43 | 45.31 |
| KRH39325 | Soybean | nucleus | 56.56 | 44.95 |
| Zm00001d013071_P001 | Maize | nucleus | 32.79 | 44.2 |
| AT4G29080.1 | Thale cress | nucleus | 54.92 | 43.93 |
| Zm00001d009532_P001 | Maize | nucleus | 50.41 | 43.77 |
| Zm00001d018973_P001 | Maize | nucleus | 35.25 | 42.57 |
| Zm00001d038980_P001 | Maize | cytosol, nucleus, plastid | 50.41 | 42.56 |
| KRH47242 | Soybean | nucleus | 54.51 | 41.69 |
| KRH44313 | Soybean | nucleus | 54.92 | 41.61 |
| Zm00001d013707_P001 | Maize | nucleus | 36.48 | 39.73 |
| Zm00001d036918_P001 | Maize | nucleus | 31.97 | 39.39 |
| Zm00001d041418_P001 | Maize | nucleus | 36.89 | 39.13 |
| Zm00001d039624_P001 | Maize | nucleus | 35.25 | 39.09 |
| Zm00001d030993_P001 | Maize | nucleus | 30.74 | 37.69 |
| Zm00001d033319_P001 | Maize | nucleus | 34.84 | 37.61 |
| KRH41538 | Soybean | golgi, plasma membrane | 54.1 | 36.97 |
| Zm00001d011588_P003 | Maize | nucleus, plastid | 47.95 | 34.31 |
| Zm00001d008749_P002 | Maize | cytosol | 30.74 | 34.25 |
| Zm00001d041416_P001 | Maize | nucleus | 41.39 | 29.36 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 33.2 | 25.31 |
| Zm00001d024008_P001 | Maize | mitochondrion | 35.66 | 25.0 |
Protein Annotations
| EntrezGene:100191581 | Gene3D:3.10.20.90 | MapMan:35.1 | ProteinID:AQK84770.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| UniProt:B4F9B9 | EMBL:BT033707 | EMBL:BT040293 | EMBL:BT040598 | EMBL:EU965283 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF17 | SUPFAM:SSF54277 |
| UniParc:UPI00017B6331 | EnsemblPlantsGene:Zm00001d037774 | EnsemblPlants:Zm00001d037774_P001 | EnsemblPlants:Zm00001d037774_T001 | SEG:seg | : |
Description
Aux/IAA-transcription factor 28Auxin-responsive protein IAA27
Coordinates
chr6:+:137231049..137234410
Molecular Weight (calculated)
26353.2 Da
IEP (calculated)
9.135
GRAVY (calculated)
-0.618
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPLDLDYI GLSPAAAAAA AHDDLKGTEL RLGLPGSGSP DRRVVAATAT TLDLLPAKGA KRGFSDEAPT PSPGAASGKG KKVAEEEDDK KVAATPQPVA
101: KAQVVGWPPI RSYRKNTMST TQLKGSKEDA EAKQDQGFLY VKVSMDGAPY LRKIDLKTYK NYKDLSTALE KMFSGFSTGK DGLSEYRKDG EYVLTYEDKD
201: GDWMLVGDVP WEMFADSCRR LRIMKGSDAI GLAPRAADKS KNRN
101: KAQVVGWPPI RSYRKNTMST TQLKGSKEDA EAKQDQGFLY VKVSMDGAPY LRKIDLKTYK NYKDLSTALE KMFSGFSTGK DGLSEYRKDG EYVLTYEDKD
201: GDWMLVGDVP WEMFADSCRR LRIMKGSDAI GLAPRAADKS KNRN
001: MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN
Arabidopsis Description
IAA27Auxin-responsive protein IAA27 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.