Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043878_P001 | Maize | nucleus, plastid | 72.43 | 91.82 |
| KXG33104 | Sorghum | nucleus, plastid | 73.31 | 90.25 |
| TraesCS3A01G270000.1 | Wheat | nucleus, plastid | 57.77 | 75.48 |
| TraesCS3D01G269700.1 | Wheat | nucleus, plastid | 56.89 | 74.9 |
| TraesCS3B01G303900.1 | Wheat | nucleus, plastid | 56.01 | 74.61 |
| Os01t0675700-01 | Rice | nucleus | 58.06 | 73.06 |
| HORVU3Hr1G062160.2 | Barley | nucleus, plastid | 55.43 | 72.69 |
| Zm00001d009532_P001 | Maize | nucleus | 48.39 | 58.72 |
| Zm00001d038980_P001 | Maize | cytosol, nucleus, plastid | 47.21 | 55.71 |
| HORVU3Hr1G088810.1 | Barley | plastid | 35.19 | 50.63 |
| GSMUA_Achr2P15340_001 | Banana | nucleus | 34.9 | 48.57 |
| Zm00001d037774_P001 | Maize | cytosol | 34.31 | 47.95 |
| Solyc03g120500.2.1 | Tomato | nucleus | 34.31 | 42.09 |
| Zm00001d039624_P001 | Maize | nucleus | 26.98 | 41.82 |
| GSMUA_Achr10P... | Banana | nucleus | 35.48 | 41.44 |
| Zm00001d013071_P001 | Maize | nucleus | 21.99 | 41.44 |
| Zm00001d024008_P001 | Maize | mitochondrion | 42.23 | 41.38 |
| PGSC0003DMT400006548 | Potato | plastid | 31.38 | 41.0 |
| Bra011082.1-P | Field mustard | nucleus | 34.6 | 40.69 |
| Zm00001d018973_P001 | Maize | nucleus | 23.75 | 40.1 |
| Zm00001d033976_P002 | Maize | nucleus | 27.86 | 40.08 |
| CDY06836 | Canola | nucleus | 29.62 | 40.08 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 37.54 | 40.0 |
| PGSC0003DMT400001013 | Potato | nucleus | 32.26 | 39.43 |
| KRH23426 | Soybean | nucleus | 35.48 | 39.41 |
| KRH74730 | Soybean | plastid | 18.48 | 39.13 |
| KRH09902 | Soybean | nucleus | 36.36 | 38.87 |
| Solyc12g007230.1.1 | Tomato | nucleus | 33.14 | 38.31 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 35.78 | 38.12 |
| AT4G29080.1 | Thale cress | nucleus | 34.02 | 38.03 |
| Zm00001d013302_P002 | Maize | nucleus | 25.22 | 37.72 |
| Zm00001d010411_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 36.07 | 37.39 |
| Zm00001d036918_P001 | Maize | nucleus | 21.7 | 37.37 |
| Zm00001d008749_P002 | Maize | cytosol | 23.46 | 36.53 |
| KRH39325 | Soybean | nucleus | 32.84 | 36.48 |
| KRH44313 | Soybean | nucleus | 34.31 | 36.34 |
| KRH60250 | Soybean | nucleus | 30.21 | 35.89 |
| Zm00001d033319_P001 | Maize | nucleus | 23.75 | 35.84 |
| KRH47242 | Soybean | nucleus | 33.43 | 35.74 |
| Zm00001d041418_P001 | Maize | nucleus | 24.05 | 35.65 |
| Zm00001d013707_P001 | Maize | nucleus | 23.17 | 35.27 |
| Zm00001d030993_P001 | Maize | nucleus | 20.53 | 35.18 |
| Zm00001d041416_P001 | Maize | nucleus | 29.91 | 29.65 |
| KRH41538 | Soybean | golgi, plasma membrane | 30.5 | 29.13 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 22.87 | 24.38 |
Protein Annotations
| EntrezGene:100193994 | Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A1D6G1J9 | ProteinID:AQK97297.1 | InterPro:AUX/IAA_dom |
| InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF16 | SUPFAM:SSF54277 | UniParc:UPI000844F793 | EnsemblPlantsGene:Zm00001d011588 | EnsemblPlants:Zm00001d011588_P003 | EnsemblPlants:Zm00001d011588_T003 |
| SEG:seg | : | : | : | : | : |
Description
rum1-like1 rum1-like1
Coordinates
chr8:+:155128553..155133508
Molecular Weight (calculated)
36739.5 Da
IEP (calculated)
9.465
GRAVY (calculated)
-0.489
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPLEPHDY IGLSAAAAAA PPTPTSSSSS SSSPAPRLTL RLGLPGSESP DRDRDRDRCE DVAAALSLGP LPATPKAPAA VSAKRAFPDP AQRPGAAKAS
101: DDKQASPAAP PAAKAQVVGW PPVRNYRKNT LAASASRSKA PAAEDAASAA RPMYVKVSMD GAPYLRKVDI KMYSSYEDLS VALQKMFSCF IAGQSGLHKS
201: SSKDRLTNGS KVDALKDQEY VLTYEDKDAD WMLVGDLPWD YFTSICRKLK IMRGSDAVGI APRTIEQTVQ KAQAELYEKS NLKQANVSIA IAYKRSTESN
301: IEDLLRCEKK ISEEITSMKA QLVEKEKGKY FMRASANLTH G
101: DDKQASPAAP PAAKAQVVGW PPVRNYRKNT LAASASRSKA PAAEDAASAA RPMYVKVSMD GAPYLRKVDI KMYSSYEDLS VALQKMFSCF IAGQSGLHKS
201: SSKDRLTNGS KVDALKDQEY VLTYEDKDAD WMLVGDLPWD YFTSICRKLK IMRGSDAVGI APRTIEQTVQ KAQAELYEKS NLKQANVSIA IAYKRSTESN
301: IEDLLRCEKK ISEEITSMKA QLVEKEKGKY FMRASANLTH G
001: MSYRLLSVDK DELVTSPCLK ERNYLGLSDC SSVDSSTIPN VVGKSNLNFK ATELRLGLPE SQSPERETDF GLLSPRTPDE KLLFPLLPSK DNGSATTGHK
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
Arabidopsis Description
IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.