Factsheet for Solyc12g007230.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g037530.2.1
Solyc03g031970.2.1
Solyc03g120380.2.1
Solyc03g121060.2.1
Solyc04g054280.1.1
Solyc04g081240.2.1
Solyc05g008850.2.1
Solyc06g053840.2.1
Solyc08g008380.2.1
Solyc08g082630.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc12g007230.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29080.1	Solyc09g083290.2.1	AT1G04250.1	21734647
AT4G29080.1	Solyc05g008850.2.1	AT1G15050.1	21734647
AT4G29080.1	Solyc04g081240.2.1	AT1G19850.1	21734647
AT4G29080.1	Solyc08g008380.2.1	AT1G34390.1	21734647
AT4G29080.1	Solyc08g082630.2.1	AT1G34390.1	21734647
AT4G29080.1	Solyc03g121060.2.1	AT1G51950.1	21734647
AT4G29080.1	Solyc03g120380.2.1	AT1G52830.1	21734647
AT4G29080.1	Solyc04g054280.1.1	AT4G14560.1	21734647
AT4G29080.1	Solyc06g053840.2.1	AT4G14560.1	21734647
AT4G29080.1	Solyc09g083280.2.1	AT4G14560.1	21734647
AT4G29080.1	Solyc04g054280.1.1	AT4G14560.1	21798944
AT4G29080.1	Solyc06g053840.2.1	AT4G14560.1	21798944
AT4G29080.1	Solyc09g083280.2.1	AT4G14560.1	21798944
AT4G29080.1	Solyc12g007230.1.1	AT4G29080.1	21734647
AT4G29080.1	Solyc02g037530.2.1	AT5G37020.1	21734647
AT4G29080.1	Solyc03g031970.2.1	AT5G37020.1	21734647
AT4G29080.1	Solyc04g054280.1.1	AT5G43700.1	21734647
AT4G29080.1	Solyc06g053840.2.1	AT5G43700.1	21734647
AT4G29080.1	Solyc09g083280.2.1	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001013	Potato	nucleus	88.47	93.55
GSMUA_Achr10P...	Banana	nucleus	56.61	60.07
GSMUA_Achr2P15340_001	Banana	nucleus	49.83	60.0
VIT_11s0016g03540.t01	Wine grape	nucleus	64.41	59.38
KRH60250	Soybean	nucleus	57.29	58.88
GSMUA_Achr10P...	Banana	nucleus	57.29	57.88
KRH39325	Soybean	nucleus	59.66	57.33
GSMUA_Achr10P...	Banana	nucleus	53.9	57.19
KRH74730	Soybean	plastid	31.19	57.14
GSMUA_Achr9P06290_001	Banana	nucleus	52.2	56.2
Solyc06g084070.2.1	Tomato	nucleus, plastid	29.49	55.77
HORVU3Hr1G031460.1	Barley	cytosol	43.39	55.65
Solyc04g054280.1.1	Tomato	nucleus	31.19	55.42
Zm00001d037774_P001	Maize	cytosol	45.76	55.33
TraesCS7A01G331100.1	Wheat	nucleus	44.75	55.0
Solyc06g008590.2.1	Tomato	nucleus	38.64	54.81
CDY06836	Canola	nucleus	46.78	54.76
TraesCS7D01G339300.1	Wheat	nucleus	44.41	54.58
GSMUA_Achr3P03400_001	Banana	nucleus	57.63	54.49
OQU77659	Sorghum	nucleus	45.76	54.22
Solyc09g083280.2.1	Tomato	nucleus	35.93	54.08
GSMUA_Achr2P09210_001	Banana	nucleus	45.42	54.03
Solyc03g120500.2.1	Tomato	nucleus	50.85	53.96
TraesCS7B01G242800.1	Wheat	nucleus	44.41	53.69
Solyc09g065850.2.1	Tomato	nucleus	33.56	53.51
EER89802	Sorghum	cytosol	45.08	53.41
GSMUA_Achr6P26730_001	Banana	nucleus	50.51	53.41
Os05t0230700-01	Rice	nucleus	46.1	52.92
Bra011082.1-P	Field mustard	nucleus	51.86	52.76
Solyc06g053830.2.1	Tomato	nucleus	38.98	52.75
Os06t0335500-01	Rice	nucleus	47.46	52.63
Solyc06g053840.2.1	Tomato	nucleus	33.9	52.63
GSMUA_Achr7P10930_001	Banana	nucleus	47.46	52.43
AT4G29080.1	Thale cress	nucleus	53.9	52.13
TraesCS3B01G181500.1	Wheat	cytosol	42.37	51.02
Solyc09g083290.2.1	Tomato	nucleus	40.68	50.85
TraesCS3D01G162700.1	Wheat	cytosol	40.34	50.21
Os01t0231000-01	Rice	nucleus	44.75	50.19
TraesCS3A01G155200.1	Wheat	cytosol	41.36	49.8
Solyc01g097290.2.1	Tomato	nucleus	42.03	49.4
KRH41538	Soybean	golgi, plasma membrane	57.97	47.9
Solyc06g008580.2.1	Tomato	nucleus	30.85	47.89
HORVU0Hr1G021630.1	Barley	cytosol, mitochondrion, nucleus	29.49	47.28
Solyc03g120380.2.1	Tomato	nucleus	29.83	45.83
TraesCS3B01G303900.1	Wheat	nucleus, plastid	38.64	44.53
Os01t0675700-01	Rice	nucleus	40.68	44.28
Os05t0559400-01	Rice	nucleus	42.03	44.13
TraesCS1A01G390200.1	Wheat	plastid	38.98	44.06
TraesCS3D01G269700.1	Wheat	nucleus, plastid	38.64	44.02
TraesCS3A01G270000.1	Wheat	nucleus, plastid	38.64	43.68
Solyc04g076850.2.1	Tomato	nucleus	51.19	43.27
TraesCS1D01G398400.1	Wheat	nucleus	38.64	43.18
Zm00001d043878_P001	Maize	nucleus, plastid	39.32	43.12
TraesCS1B01G418400.1	Wheat	nucleus	35.25	42.45
KXG33104	Sorghum	nucleus, plastid	39.66	42.24
HORVU3Hr1G062160.2	Barley	nucleus, plastid	36.95	41.92
Solyc03g120390.2.1	Tomato	nucleus, plastid	35.59	41.67
KXG22521	Sorghum	nucleus	38.98	41.22
Zm00001d009532_P001	Maize	nucleus	38.31	40.21
Zm00001d038980_P001	Maize	cytosol, nucleus, plastid	39.32	40.14
Zm00001d010411_P001	Maize	cytosol, endoplasmic reticulum, nucleus	42.71	38.3
HORVU3Hr1G088810.1	Barley	plastid	29.15	36.29
HORVU1Hr1G086070.6	Barley	plastid	37.63	35.46
Zm00001d011588_P003	Maize	nucleus, plastid	38.31	33.14
Zm00001d024008_P001	Maize	mitochondrion	28.47	24.14

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	UniProt:G9HPV7	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
EMBL:JN379436	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF39
SUPFAM:SSF54277	EnsemblPlantsGene:Solyc12g007230.1	EnsemblPlants:Solyc12g007230.1.1	UniParc:UPI000243DBF7	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:G9HPV7]

Coordinates

chr12:+:1648825..1652254

Molecular Weight (calculated)

32043.1 Da

IEP (calculated)

8.374

GRAVY (calculated)

-0.489

Length

295 amino acids

Sequence
(BLAST)

001: MSISIEGNSD KSCVSSMDSK DLNFKATELR LGLPGSESPP DKNDYPLGVL KIFPSGAKRG FSDTINGDSG RWGFGSEVDF VKNSSFIVSP KGVKVGNKIL
101: GSVCNESSSV KEGTPKSPRP VEEKKALICS TNSHGVAPAA KAQVVGWPPI RSFRKNMVSN PPKTEEDANG KLVAGCHYVK VSMDGAPYLR KVDLTMYNSY
201: KDLSSALEKM FRCFKAGQCE TQGISLSDGL KESKLADLLH GSEYALTYED KDGDWMLVGD VPWEMFTESC KKLRIMKSSD ANGLAPRAAE KCKDR

Best Arabidopsis Sequence Match ( AT4G29080.1 )
(BLAST)

001: MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN

Arabidopsis Description

IAA27Auxin-responsive protein IAA27 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSY8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.