Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G162700.1 | Wheat | cytosol | 93.06 | 96.2 |
| TraesCS3A01G155200.1 | Wheat | cytosol | 95.51 | 95.51 |
| HORVU3Hr1G031460.1 | Barley | cytosol | 83.27 | 88.7 |
| Os01t0231000-01 | Rice | nucleus | 79.59 | 74.14 |
| TraesCS7B01G242800.1 | Wheat | nucleus | 55.92 | 56.15 |
| GSMUA_Achr10P... | Banana | nucleus | 59.18 | 52.16 |
| GSMUA_Achr7P10930_001 | Banana | nucleus | 55.51 | 50.94 |
| GSMUA_Achr9P06290_001 | Banana | nucleus | 56.33 | 50.37 |
| GSMUA_Achr6P26730_001 | Banana | nucleus | 55.92 | 49.1 |
| GSMUA_Achr2P09210_001 | Banana | nucleus | 48.57 | 47.98 |
| Solyc03g120500.2.1 | Tomato | nucleus | 51.02 | 44.96 |
| KRH23426 | Soybean | nucleus | 56.33 | 44.95 |
| TraesCS5B01G446100.1 | Wheat | cytosol, mitochondrion, nucleus | 32.24 | 44.63 |
| KRH09902 | Soybean | nucleus | 57.96 | 44.51 |
| PGSC0003DMT400006548 | Potato | plastid | 47.35 | 44.44 |
| TraesCS7B01G256100.1 | Wheat | cytosol, nucleus, plastid | 32.24 | 43.65 |
| TraesCS3B01G303900.1 | Wheat | nucleus, plastid | 45.31 | 43.36 |
| TraesCS1B01G418400.1 | Wheat | nucleus | 43.27 | 43.27 |
| KRH60250 | Soybean | nucleus | 50.61 | 43.21 |
| PGSC0003DMT400001013 | Potato | nucleus | 48.57 | 42.65 |
| TraesCS5B01G058800.1 | Wheat | cytosol | 37.14 | 42.52 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 55.51 | 42.5 |
| Solyc12g007230.1.1 | Tomato | nucleus | 51.02 | 42.37 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 40.41 | 42.31 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 55.1 | 42.19 |
| Bra011082.1-P | Field mustard | nucleus | 49.8 | 42.07 |
| TraesCS1B01G138100.1 | Wheat | cytosol | 33.88 | 41.92 |
| KRH39325 | Soybean | nucleus | 51.84 | 41.37 |
| CDY06836 | Canola | nucleus | 42.45 | 41.27 |
| KRH74730 | Soybean | plastid | 26.94 | 40.99 |
| TraesCS3B01G140700.1 | Wheat | cytosol | 32.24 | 40.93 |
| AT4G29080.1 | Thale cress | nucleus | 49.8 | 40.0 |
| KRH47242 | Soybean | nucleus | 51.02 | 39.19 |
| KRH44313 | Soybean | nucleus | 51.43 | 39.13 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 40.0 | 38.89 |
| TraesCS5B01G381800.1 | Wheat | nucleus | 32.24 | 37.26 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 37.14 | 35.97 |
| KRH41538 | Soybean | golgi, plasma membrane | 50.2 | 34.45 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF17 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS3B01G181500 | EnsemblPlants:TraesCS3B01G181500.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3B:+:190468446..190472705
Molecular Weight (calculated)
26624.8 Da
IEP (calculated)
9.565
GRAVY (calculated)
-0.618
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPLELDYI GLSAAAGGRP DDDLKGTELR LGLPGCESPD RRPVAATTTL ELLPAKGAKR GFSDEVVPPA PISAAGKGKE ASGDEKDKKV AAPPQPAAKA
101: QVVGWPPVRS YRKNTMATTT NQLKSSKEDS DTKQGQEFLY VKVSMDGAPY LRKVDLKTYK NYKDMVVALG KMFIGFRTGK DGASENRKDG EYVMTYEDKD
201: GDWMLVGDVP WEMFTEACRR IRVMKSSDVV GLGVTRAGVK SKNKN
101: QVVGWPPVRS YRKNTMATTT NQLKSSKEDS DTKQGQEFLY VKVSMDGAPY LRKVDLKTYK NYKDMVVALG KMFIGFRTGK DGASENRKDG EYVMTYEDKD
201: GDWMLVGDVP WEMFTEACRR IRVMKSSDVV GLGVTRAGVK SKNKN
001: MSYRLLSVDK DELVTSPCLK ERNYLGLSDC SSVDSSTIPN VVGKSNLNFK ATELRLGLPE SQSPERETDF GLLSPRTPDE KLLFPLLPSK DNGSATTGHK
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLGAV EKSKNKERV
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLGAV EKSKNKERV
Arabidopsis Description
IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.