Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G491200.2 | Wheat | nucleus | 98.32 | 98.32 |
| TraesCS2B01G519200.2 | Wheat | nucleus | 97.8 | 97.8 |
| HORVU2Hr1G109650.18 | Barley | nucleus | 94.87 | 94.67 |
| EES13038 | Sorghum | nucleus | 78.32 | 79.07 |
| Os04t0664400-01 | Rice | nucleus | 76.13 | 79.02 |
| Zm00001d026540_P002 | Maize | nucleus | 77.59 | 77.27 |
| Zm00001d001945_P002 | Maize | nucleus | 74.66 | 75.21 |
| Bra025775.1-P | Field mustard | nucleus | 33.3 | 67.66 |
| GSMUA_Achr1P20040_001 | Banana | nucleus | 44.92 | 54.86 |
| GSMUA_Achr6P36980_001 | Banana | nucleus | 46.6 | 51.86 |
| Bra016492.1-P | Field mustard | nucleus | 41.26 | 47.13 |
| CDY62586 | Canola | nucleus | 41.36 | 46.69 |
| CDX83741 | Canola | nucleus | 41.26 | 46.57 |
| CDY61164 | Canola | nucleus | 41.68 | 46.23 |
| CDY01393 | Canola | nucleus | 41.78 | 46.13 |
| Bra012190.1-P | Field mustard | nucleus | 41.78 | 46.02 |
| CDY29392 | Canola | nucleus | 42.09 | 45.89 |
| VIT_18s0001g13930.t01 | Wine grape | nucleus | 45.65 | 45.75 |
| CDY39348 | Canola | nucleus | 41.99 | 45.62 |
| KRH17404 | Soybean | nucleus | 43.98 | 45.16 |
| AT1G19850.1 | Thale cress | nucleus | 42.62 | 45.12 |
| KRH05923 | Soybean | nucleus | 43.77 | 44.8 |
| Solyc04g081240.2.1 | Tomato | nucleus | 42.93 | 44.09 |
| GSMUA_Achr1P20000_001 | Banana | nucleus | 44.61 | 43.87 |
| PGSC0003DMT400009660 | Potato | nucleus | 42.62 | 43.81 |
| GSMUA_Achr1P20010_001 | Banana | plasma membrane, plastid | 42.51 | 38.67 |
| TraesCS2A01G547800.1 | Wheat | nucleus | 33.4 | 38.39 |
| TraesCS7A01G461700.1 | Wheat | nucleus | 34.66 | 36.41 |
| TraesCS5A01G038300.2 | Wheat | nucleus | 34.24 | 36.37 |
| TraesCS6A01G138600.4 | Wheat | nucleus | 33.82 | 34.81 |
| TraesCS2A01G309300.1 | Wheat | nucleus | 23.46 | 34.25 |
| TraesCS7A01G160800.1 | Wheat | nucleus | 36.02 | 32.27 |
| TraesCS7A01G252000.2 | Wheat | nucleus | 35.29 | 31.0 |
| TraesCS3A01G442000.1 | Wheat | nucleus | 24.82 | 29.74 |
| TraesCS6A01G113000.1 | Wheat | nucleus | 35.08 | 29.52 |
| TraesCS7A01G416400.1 | Wheat | nucleus | 35.08 | 28.56 |
| TraesCS3A01G449300.3 | Wheat | nucleus | 24.19 | 27.86 |
| TraesCS3A01G159200.1 | Wheat | nucleus | 21.99 | 27.67 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009733 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 |
| GO:GO:0009908 | GO:GO:0009942 | GO:GO:0009987 | GO:GO:0010051 | GO:GO:0010305 | GO:GO:0016020 |
| GO:GO:0042802 | GO:GO:0044212 | GO:GO:0048364 | GO:GO:0048507 | InterPro:IPR000270 | InterPro:IPR003340 |
| InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 |
| PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF10 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS2A01G491000 | EnsemblPlants:TraesCS2A01G491000.1 | TIGR:cd10017 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2A:+:724297632..724302431
Molecular Weight (calculated)
105523.0 Da
IEP (calculated)
6.053
GRAVY (calculated)
-0.554
Length
955 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASQEKQQ QLPTFGVLRN AAALLDEMQL MGEAQGAKKV INSELWHACA GPLVCLPQRG SLVYYFPQGH SEQVAATTKK TPNSRIPNYP SLPSQLLCQV
101: HNITMHADKD TDEVYAQMTL QPVNSETDVF PIPSLGSYAK SKHPAEYFCK NLTASDTSTH GGFSVPRRAA EKLFPQLDYS MQPPNQELIV RDLHDNMWTF
201: RHIYRGQPKR HLLTTGWSLF VGAKRLKAGD SVLFIRDEKS QLLVGVRRAT NQQTALSSSV LSTDSMHIGV LAAAAHAASS GSSFTIYYNP RTSPSPFVVP
301: VARYNKANYI QQSVGMRMAM MFETEESSKR RYTGTIVGVS DSDPMRWPNS KWRNLQIEWD EHGYGERPER VSIWDIETPE NTIVFPSASL NSKRQCLPGY
401: GVPGLDIASV NMSPFQRAPG NPYGNLQHMP AVGSELAMMM FLNQSGQNIG TPLSCHQSSY SSIIQNVKQN YMPPSTFGHP IGSIKPESMP SNEVQQQQQL
501: HAPKMQRGDS ESCEVHPATD SVSASELHVA GREPRNTDKY PSQSISEQNG KGEPRVKPRR SKKGSSRKTI SENSELSSAP SQICDDQLHV SEAELISCDT
601: KNVNCGNNEG SSGALTHGDF AGQLQCQQVE QNELVSPPKL ESSISPDGGK SVNSFPNQAS FSQFFDGLDW MVQPPYYQDS NGIQSVSASE NIFSPSANMA
701: STINTDTLET FQNSCLSDCF PNSIQDFVGS PDLHSLTFLS PEMQNLDVHH DGSNVPSTSN SYVQMSFSED DSGNHMESMQ RGMNNISSCS QPQTTEGFNL
801: GMYSKLPSLK ESQVLSLPEI HNSSRGTSSC SMDAAEYSID RNAKPMKPPV RTYTKVQKLG SVGRSIDVTR YRDYRELRSA IASMFGLQGK LEHPASSDWK
901: LVYVDYENDV LLVGDDPWEE FINCVRCIRI LSPSEVQQMS ENGMQVLNDC IQADQ
101: HNITMHADKD TDEVYAQMTL QPVNSETDVF PIPSLGSYAK SKHPAEYFCK NLTASDTSTH GGFSVPRRAA EKLFPQLDYS MQPPNQELIV RDLHDNMWTF
201: RHIYRGQPKR HLLTTGWSLF VGAKRLKAGD SVLFIRDEKS QLLVGVRRAT NQQTALSSSV LSTDSMHIGV LAAAAHAASS GSSFTIYYNP RTSPSPFVVP
301: VARYNKANYI QQSVGMRMAM MFETEESSKR RYTGTIVGVS DSDPMRWPNS KWRNLQIEWD EHGYGERPER VSIWDIETPE NTIVFPSASL NSKRQCLPGY
401: GVPGLDIASV NMSPFQRAPG NPYGNLQHMP AVGSELAMMM FLNQSGQNIG TPLSCHQSSY SSIIQNVKQN YMPPSTFGHP IGSIKPESMP SNEVQQQQQL
501: HAPKMQRGDS ESCEVHPATD SVSASELHVA GREPRNTDKY PSQSISEQNG KGEPRVKPRR SKKGSSRKTI SENSELSSAP SQICDDQLHV SEAELISCDT
601: KNVNCGNNEG SSGALTHGDF AGQLQCQQVE QNELVSPPKL ESSISPDGGK SVNSFPNQAS FSQFFDGLDW MVQPPYYQDS NGIQSVSASE NIFSPSANMA
701: STINTDTLET FQNSCLSDCF PNSIQDFVGS PDLHSLTFLS PEMQNLDVHH DGSNVPSTSN SYVQMSFSED DSGNHMESMQ RGMNNISSCS QPQTTEGFNL
801: GMYSKLPSLK ESQVLSLPEI HNSSRGTSSC SMDAAEYSID RNAKPMKPPV RTYTKVQKLG SVGRSIDVTR YRDYRELRSA IASMFGLQGK LEHPASSDWK
901: LVYVDYENDV LLVGDDPWEE FINCVRCIRI LSPSEVQQMS ENGMQVLNDC IQADQ
001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
Arabidopsis Description
ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.