Factsheet for AT1G19850.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025775.1-P	Field mustard	nucleus	50.0	95.96
CDY29392	Canola	nucleus	87.58	90.18
CDY61164	Canola	nucleus	85.81	89.9
CDY01393	Canola	nucleus	86.03	89.71
Bra012190.1-P	Field mustard	nucleus	86.14	89.62
CDY39348	Canola	nucleus	86.92	89.19
Bra016492.1-P	Field mustard	nucleus	82.48	89.0
CDX83741	Canola	nucleus	83.37	88.89
CDY62586	Canola	nucleus	83.26	88.77
VIT_18s0001g13930.t01	Wine grape	nucleus	63.53	60.13
Solyc04g081240.2.1	Tomato	nucleus	61.42	59.57
PGSC0003DMT400009660	Potato	nucleus	61.31	59.53
KRH05923	Soybean	nucleus	60.2	58.2
KRH17404	Soybean	nucleus	59.98	58.17
GSMUA_Achr1P20040_001	Banana	nucleus	44.57	51.41
GSMUA_Achr6P36980_001	Banana	nucleus	44.57	46.85
EES13038	Sorghum	nucleus	46.12	43.97
Os04t0664400-01	Rice	nucleus	44.12	43.26
Zm00001d001945_P002	Maize	nucleus	45.12	42.93
TraesCS2B01G519200.2	Wheat	nucleus	45.34	42.83
TraesCS2D01G491200.2	Wheat	nucleus	45.23	42.72
TraesCS2A01G491000.1	Wheat	nucleus	45.12	42.62
Zm00001d026540_P002	Maize	nucleus	45.01	42.34
HORVU2Hr1G109650.18	Barley	nucleus	44.9	42.32
GSMUA_Achr1P20000_001	Banana	nucleus	44.35	41.19
AT5G37020.1	Thale cress	nucleus	34.59	38.47
AT3G61830.1	Thale cress	nucleus	24.5	36.71
AT1G30330.3	Thale cress	nucleus	37.58	36.26
AT4G23980.1	Thale cress	nucleus	25.61	36.21
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	42.13	36.19
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	24.61	35.69
AT1G59750.1	Thale cress	nucleus	25.94	35.19
AT1G34390.1	Thale cress	nucleus	22.51	33.95
AT1G35240.1	Thale cress	nucleus	22.17	33.78
AT1G34410.1	Thale cress	nucleus	22.62	33.66
AT1G35520.1	Thale cress	nucleus	22.06	33.56
AT1G35540.1	Thale cress	nucleus	22.28	33.22
AT1G34310.1	Thale cress	nucleus	21.84	33.22
AT1G19220.1	Thale cress	nucleus	39.58	32.87
AT1G34170.3	Thale cress	nucleus	19.18	31.68
AT5G20730.1	Thale cress	nucleus	40.24	31.16
AT5G60450.1	Thale cress	nucleus	25.39	29.06
AT5G62000.1	Thale cress	nucleus	27.49	28.87

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	PDB:4CHK	PDB:4LDU
EntrezGene:838573	UniProt:A0A178W993	ProteinID:AAC39410.1	ProteinID:AAG12546.1	EMBL:AB199792	ProteinID:ABR09007.1
ProteinID:ABR09008.1	ProteinID:ABR09009.1	ProteinID:ABR09010.1	ProteinID:ABR09011.1	ProteinID:ABR09012.1	ProteinID:ABR09013.1
ProteinID:ABR09014.1	ProteinID:ABR09015.1	ProteinID:ABR09016.1	ProteinID:ABR09017.1	ProteinID:ABR09018.1	ProteinID:ABR09019.1
ProteinID:ABR09020.1	ProteinID:ABR09021.1	ProteinID:ABR09022.1	ProteinID:ABR09023.1	ProteinID:ABR09024.1	ProteinID:ABR09025.1
ProteinID:ABR09026.1	ProteinID:ABR09027.1	ProteinID:ABR09028.1	ProteinID:ABR09029.1	ProteinID:ABR09030.1	ProteinID:AEE29906.1
EMBL:AF037229	EMBL:AF334716	ProteinID:ANM58803.1	ArrayExpress:AT1G19850	EnsemblPlantsGene:AT1G19850	RefSeq:AT1G19850
TAIR:AT1G19850	RefSeq:AT1G19850-TAIR-G	EnsemblPlants:AT1G19850.1	TAIR:AT1G19850.1	InterPro:AUX/IAA_dom	Unigene:At.10494
InterPro:Auxin_resp	InterPro:B3_DNA-bd	EMBL:BT002050	EMBL:BT008805	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733	GO:GO:0009734	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009908	GO:GO:0009942	GO:GO:0009987	GO:GO:0010051
GO:GO:0010305	GO:GO:0016020	GO:GO:0042802	GO:GO:0044212	GO:GO:0048364	GO:GO:0048507
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	Symbol:MP	RefSeq:NP_001321214.1	RefSeq:NP_173414.1
ProteinID:OAP14918.1	UniProt:P93024	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF10	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	EMBL:U79557	UniParc:UPI0000001B13
SEG:seg	:	:	:	:	:

Description

ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]

Coordinates

chr1:+:6886669..6891404

Molecular Weight (calculated)

99655.8 Da

IEP (calculated)

5.929

GRAVY (calculated)

-0.400

Length

902 amino acids

Sequence
(BLAST)

001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.