Factsheet for AT1G30330.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02285	Canola	nucleus	88.98	95.3
CDY09598	Canola	nucleus	88.45	95.06
CDX90245	Canola	nucleus	85.13	93.43
Bra010776.1-P	Field mustard	nucleus	82.99	93.27
CDY12048	Canola	nucleus	84.28	93.03
KRH58711	Soybean	nucleus	38.5	91.6
VIT_10s0003g04100.t01	Wine grape	nucleus	72.94	75.11
KRH21113	Soybean	nucleus	70.59	73.66
KRH11131	Soybean	nucleus	70.7	73.61
KRH42603	Soybean	nucleus	69.09	71.38
GSMUA_Achr5P02450_001	Banana	nucleus	62.46	70.53
GSMUA_Achr3P23290_001	Banana	nucleus	60.86	69.39
GSMUA_Achr5P26580_001	Banana	nucleus	58.93	68.28
GSMUA_Achr5P00590_001	Banana	nucleus	64.49	66.34
GSMUA_Achr11P...	Banana	nucleus	64.17	65.72
GSMUA_Achr11P...	Banana	nucleus	57.97	65.38
TraesCS7A01G461700.1	Wheat	nucleus	63.1	64.91
TraesCS7B01G363100.1	Wheat	nucleus	63.1	64.91
GSMUA_Achr6P19850_001	Banana	nucleus	59.14	64.68
TraesCS7D01G449900.2	Wheat	nucleus	62.78	64.65
Os02t0164900-01	Rice	nucleus	62.35	64.21
EER90218	Sorghum	nucleus	63.1	64.2
Os06t0677800-01	Rice	nucleus	62.67	63.9
Zm00001d014377_P002	Maize	nucleus	62.67	63.9
EES17392	Sorghum	nucleus	60.75	63.46
EES04575	Sorghum	nucleus	61.71	63.34
HORVU7Hr1G106280.1	Barley	nucleus	62.99	62.79
Zm00001d031064_P003	Maize	nucleus	60.21	62.76
Zm00001d041497_P005	Maize	nucleus	59.47	62.61
Os12t0613700-01	Rice	nucleus	59.68	62.07
TraesCS6D01G127600.2	Wheat	nucleus	61.5	62.03
TraesCS6B01G167100.1	Wheat	nucleus	61.28	61.81
Zm00001d053819_P002	Maize	nucleus	60.75	61.81
TraesCS6A01G138600.4	Wheat	nucleus	61.28	61.75
HORVU6Hr1G026730.9	Barley	nucleus	61.07	61.46
HORVU5Hr1G009650.20	Barley	nucleus	58.29	61.17
TraesCS5B01G039800.1	Wheat	nucleus	58.18	61.05
TraesCS5A01G038300.2	Wheat	nucleus	58.29	60.62
TraesCS5D01G045700.2	Wheat	nucleus	58.29	60.56
AT5G37020.1	Thale cress	nucleus	52.19	60.17
Zm00001d036593_P001	Maize	plastid	61.71	60.1
AT3G61830.1	Thale cress	nucleus	24.49	38.04
AT1G19220.1	Thale cress	nucleus	43.85	37.75
AT1G19850.1	Thale cress	nucleus	36.26	37.58
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	24.28	36.5
AT1G59750.1	Thale cress	nucleus	25.45	35.79
AT4G23980.1	Thale cress	nucleus	24.39	35.74
AT1G34410.1	Thale cress	nucleus	22.99	35.48
AT1G34390.1	Thale cress	nucleus	22.67	35.45
AT5G20730.1	Thale cress	nucleus	44.17	35.45
AT1G35240.1	Thale cress	nucleus	22.35	35.3
AT1G34310.1	Thale cress	nucleus	22.35	35.24
AT1G35520.1	Thale cress	nucleus	22.25	35.08
AT1G35540.1	Thale cress	nucleus	22.67	35.04
AT1G34170.3	Thale cress	nucleus	19.89	34.07
AT5G62000.1	Thale cress	nucleus	29.84	32.48
AT5G60450.1	Thale cress	nucleus	26.52	31.47

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:839913	ProteinID:AAG51093.1
ProteinID:ACB30835.1	ProteinID:ACB30836.1	ProteinID:ACB30837.1	ProteinID:ACB30838.1	ProteinID:ACB30839.1	ProteinID:ACB30840.1
ProteinID:ACB30841.1	ProteinID:ACB30842.1	ProteinID:ACB30843.1	ProteinID:ACB30844.1	ProteinID:ACB30845.1	ProteinID:ACB30846.1
ProteinID:ACB30847.1	ProteinID:ACB30848.1	ProteinID:ACB30849.1	ProteinID:ACB30850.1	ProteinID:ACB30851.1	ProteinID:ACB30852.1
ProteinID:ACB30853.1	ProteinID:ACB30854.1	ProteinID:ACB30855.1	ProteinID:ACB30856.1	ProteinID:ACB30857.1	ProteinID:ACB30858.1
ProteinID:AEE31206.1	ProteinID:AEE31207.1	EMBL:AF013467	ProteinID:ANM58494.1	Symbol:ARF6	ArrayExpress:AT1G30330
EnsemblPlantsGene:AT1G30330	RefSeq:AT1G30330	TAIR:AT1G30330	RefSeq:AT1G30330-TAIR-G	EnsemblPlants:AT1G30330.3	InterPro:AUX/IAA_dom
EMBL:AY669788	Unigene:At.21939	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733	GO:GO:0009734
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
RefSeq:NP_001031115.1	RefSeq:NP_001320924.1	RefSeq:NP_174323.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF68	UniProt:Q9ZTX8
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000049F94C	SEG:seg	:

Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]

Coordinates

chr1:-:10685822..10690988

Molecular Weight (calculated)

103263.0 Da

IEP (calculated)

6.418

GRAVY (calculated)

-0.549

Length

935 amino acids

Sequence
(BLAST)

001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.