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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH58711 Soybean nucleus 40.2 92.88
KRH21113 Soybean nucleus 80.07 81.14
KRH11131 Soybean nucleus 79.63 80.51
KRH42603 Soybean nucleus 78.74 79.01
CDY02285 Canola nucleus 73.02 75.94
GSMUA_Achr5P02450_001 Banana nucleus 68.5 75.12
CDY09598 Canola nucleus 71.59 74.71
CDY12048 Canola nucleus 69.6 74.62
CDX90245 Canola nucleus 69.82 74.41
Bra010776.1-P Field mustard nucleus 68.17 74.4
VIT_12s0028g01170.t01 Wine grape nucleus 75.44 73.89
AT1G30330.3 Thale cress nucleus 75.11 72.94
GSMUA_Achr5P26580_001 Banana nucleus 64.43 72.49
GSMUA_Achr3P23290_001 Banana nucleus 65.31 72.32
GSMUA_Achr5P00590_001 Banana nucleus 71.26 71.18
GSMUA_Achr11P... Banana nucleus 70.15 69.77
TraesCS7B01G363100.1 Wheat nucleus 69.6 69.53
TraesCS7A01G461700.1 Wheat nucleus 69.6 69.53
TraesCS7D01G449900.2 Wheat nucleus 69.49 69.49
GSMUA_Achr6P19850_001 Banana nucleus 65.42 69.47
GSMUA_Achr11P... Banana nucleus 63.33 69.36
EER90218 Sorghum nucleus 69.49 68.66
Os06t0677800-01 Rice nucleus 69.27 68.59
Os02t0164900-01 Rice nucleus 68.39 68.39
Zm00001d014377_P002 Maize nucleus 68.61 67.94
HORVU7Hr1G106280.1 Barley nucleus 69.93 67.7
EES04575 Sorghum nucleus 67.62 67.4
TraesCS6A01G138600.4 Wheat nucleus 67.29 65.84
TraesCS6D01G127600.2 Wheat nucleus 67.18 65.8
TraesCS6B01G167100.1 Wheat nucleus 66.96 65.59
HORVU6Hr1G026730.9 Barley nucleus 66.63 65.12
Zm00001d053819_P002 Maize nucleus 65.53 64.74
EES17392 Sorghum nucleus 63.77 64.69
Zm00001d036593_P001 Maize plastid 67.95 64.27
Zm00001d031064_P003 Maize nucleus 63.33 64.1
Os12t0613700-01 Rice nucleus 63.0 63.63
TraesCS5B01G039800.1 Wheat nucleus 62.33 63.52
HORVU5Hr1G009650.20 Barley nucleus 62.22 63.41
Zm00001d041497_P005 Maize nucleus 62.0 63.4
TraesCS5D01G045700.2 Wheat nucleus 62.56 63.11
TraesCS5A01G038300.2 Wheat nucleus 62.44 63.07
VIT_04s0079g00200.t01 Wine grape nucleus 44.27 56.86
VIT_18s0001g13930.t01 Wine grape nucleus 41.85 39.87
VIT_18s0089g00910.t01 Wine grape nucleus 27.64 38.67
VIT_11s0016g00640.t01 Wine grape nucleus 49.12 38.61
VIT_12s0035g01800.t01 Wine grape nucleus 28.74 38.5
VIT_11s0065g00310.t01 Wine grape nucleus 46.48 37.85
VIT_02s0025g01740.t01 Wine grape nucleus 27.75 36.95
VIT_15s0046g00290.t01 Wine grape nucleus 27.97 36.18
VIT_07s0104g01230.t01 Wine grape nucleus 26.87 35.06
VIT_01s0244g00150.t01 Wine grape nucleus 28.63 33.81
VIT_17s0000g00320.t01 Wine grape nucleus 30.84 32.48
VIT_06s0004g03130.t01 Wine grape nucleus 27.53 31.33
Protein Annotations
EntrezGene:100242923wikigene:100242923MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90
InterPro:AUX/IAA_domInterPro:Auxin_respInterPro:B3_DNA-bdProteinID:CCB55818ProteinID:CCB55818.1InterPro:DNA-bd_pseudobarrel_sf
UniProt:F6HLU4EMBL:FN595992GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009719GO:GO:0009725GO:GO:0009734GO:GO:0009987InterPro:IPR000270
InterPro:IPR003340InterPro:IPR015300EntrezGene:LOC100242923wikigene:LOC100242923InterPro:PB1_domPFAM:PF02309
PFAM:PF02362PFAM:PF06507PFscan:PS50863PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF68
SMART:SM01019SUPFAM:SSF101936SUPFAM:SSF54277TIGR:TC67931UniParc:UPI00019842F1ArrayExpress:VIT_10s0003g04100
EnsemblPlantsGene:VIT_10s0003g04100EnsemblPlants:VIT_10s0003g04100.t01unigene:Vvi.12192RefSeq:XP_002279808RefSeq:XP_002279808.1SEG:seg
Description
Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F6HLU4]
Coordinates
chr10:-:6956492..6964165
Molecular Weight (calculated)
100520.0 Da
IEP (calculated)
6.647
GRAVY (calculated)
-0.439
Length
908 amino acids
Sequence
(BLAST)
001: MRLSPAGFTH QTQEGEKRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLSPQEQKDA YLPAELGVPS KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYAKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSLHGIKDD DLGMNSPLMW
401: LRGDNVDRGI QSLNFQGIGV NPWMQPRLDA SMLGLQTDMY QAMAAAALQE MRAVDPSKQA PAPLLHYQQP QNVASRSSCI MQPQMLQQSQ PQQAFLQGIH
501: ENTNQAQSQT QSHLLQQHLQ HQHSFNNNNN NNNQQQQPAP PPQQPQQQLV DHQRIPSVVS AISQFASASQ SQSPSLQTIS SLCQQQSFSD STGNPGTSPI
601: ISPLQSLLGS FPQDESSNLL NMPRSTSLMP SAAWLPKRVA VEPLLPSGAS QCILPQVEQL GQPQTNISQN SISLPPFPGR ECSIDQEGST DPQSHLLFGV
701: NIEPSSLLMQ NGMSGLRGVG SESDSTAIPF SSSNFMSSTG TDFSLNPAMT PSSCIDESGF LQSPENVGQV NPPTRTFVKV YKSGSFGRSL DITKFSSYHE
801: LRGELARMFG LEGQLEDPRR SGWQLVFVDR ENDVLLLGDD PWPEFVNSVW CIKILSLQEV QQMGKRGLEL LNSVPIQRLT SSSCDDYASR QDSRNLSTGI
901: TSVGSLDY
Best Arabidopsis Sequence Match ( AT1G30330.1 )
(BLAST)
001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY
Arabidopsis Description
ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.