Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58711 | Soybean | nucleus | 38.72 | 89.57 |
| GSMUA_Achr11P... | Banana | nucleus | 75.25 | 82.51 |
| GSMUA_Achr8P13630_001 | Banana | cytosol, nucleus, plastid | 25.96 | 78.93 |
| GSMUA_Achr6P19850_001 | Banana | nucleus | 73.71 | 78.36 |
| GSMUA_Achr5P26580_001 | Banana | nucleus | 66.78 | 75.22 |
| GSMUA_Achr3P23290_001 | Banana | nucleus | 67.77 | 75.12 |
| GSMUA_Achr11P... | Banana | nucleus | 73.82 | 73.49 |
| GSMUA_Achr5P02450_001 | Banana | nucleus | 65.24 | 71.62 |
| VIT_10s0003g04100.t01 | Wine grape | nucleus | 71.18 | 71.26 |
| Os06t0677800-01 | Rice | nucleus | 71.07 | 70.45 |
| Os02t0164900-01 | Rice | nucleus | 69.42 | 69.49 |
| EER90218 | Sorghum | nucleus | 70.08 | 69.31 |
| KRH11131 | Soybean | nucleus | 68.43 | 69.27 |
| TraesCS7A01G461700.1 | Wheat | nucleus | 69.2 | 69.2 |
| EES04575 | Sorghum | nucleus | 69.31 | 69.15 |
| TraesCS7B01G363100.1 | Wheat | nucleus | 69.09 | 69.09 |
| TraesCS7D01G449900.2 | Wheat | nucleus | 68.98 | 69.05 |
| Zm00001d014377_P002 | Maize | nucleus | 69.2 | 68.59 |
| KRH21113 | Soybean | nucleus | 67.55 | 68.53 |
| CDY02285 | Canola | nucleus | 64.58 | 67.24 |
| HORVU7Hr1G106280.1 | Barley | nucleus | 69.31 | 67.16 |
| KRH42603 | Soybean | nucleus | 66.56 | 66.85 |
| CDY09598 | Canola | nucleus | 63.81 | 66.67 |
| TraesCS6D01G127600.2 | Wheat | nucleus | 67.88 | 66.56 |
| TraesCS6A01G138600.4 | Wheat | nucleus | 67.77 | 66.38 |
| TraesCS6B01G167100.1 | Wheat | nucleus | 67.66 | 66.34 |
| Zm00001d053819_P002 | Maize | nucleus | 66.89 | 66.16 |
| HORVU6Hr1G026730.9 | Barley | nucleus | 67.33 | 65.88 |
| Bra010776.1-P | Field mustard | nucleus | 60.07 | 65.62 |
| CDX90245 | Canola | nucleus | 61.39 | 65.49 |
| CDY12048 | Canola | nucleus | 60.95 | 65.41 |
| Zm00001d036593_P001 | Maize | plastid | 68.65 | 65.0 |
| AT1G30330.3 | Thale cress | nucleus | 66.34 | 64.49 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 33.88 | 60.27 |
| GSMUA_Achr11P... | Banana | nucleus | 53.03 | 59.51 |
| GSMUA_Achr4P25960_001 | Banana | nucleus | 51.71 | 58.68 |
| GSMUA_Achr1P08230_001 | Banana | mitochondrion | 35.86 | 49.1 |
| GSMUA_Achr3P10240_001 | Banana | nucleus | 32.34 | 47.42 |
| GSMUA_Achr9P18170_001 | Banana | nucleus | 40.26 | 42.86 |
| GSMUA_Achr1P20040_001 | Banana | nucleus | 36.52 | 42.46 |
| GSMUA_Achr9P08310_001 | Banana | vacuole | 22.33 | 41.68 |
| GSMUA_Achr8P13620_001 | Banana | nucleus | 22.11 | 41.53 |
| GSMUA_Achr9P14090_001 | Banana | nucleus | 41.03 | 40.99 |
| GSMUA_Achr3P05460_001 | Banana | nucleus | 43.01 | 40.19 |
| GSMUA_Achr6P36980_001 | Banana | nucleus | 36.52 | 38.69 |
| GSMUA_Achr5P05010_001 | Banana | nucleus | 35.64 | 37.2 |
| GSMUA_Achr10P... | Banana | nucleus | 27.17 | 36.65 |
| GSMUA_Achr6P07390_001 | Banana | nucleus | 26.29 | 36.49 |
| GSMUA_Achr8P23850_001 | Banana | nucleus | 42.46 | 36.18 |
| GSMUA_Achr6P01740_001 | Banana | nucleus | 40.92 | 35.8 |
| GSMUA_AchrUn_... | Banana | nucleus | 24.86 | 35.59 |
| GSMUA_Achr6P12780_001 | Banana | nucleus | 26.95 | 35.2 |
| GSMUA_Achr6P29070_001 | Banana | nucleus, vacuole | 26.62 | 34.72 |
| GSMUA_Achr2P19760_001 | Banana | nucleus | 25.41 | 34.58 |
| GSMUA_Achr7P24330_001 | Banana | nucleus | 24.86 | 33.93 |
| GSMUA_Achr10P... | Banana | nucleus | 24.75 | 33.73 |
| GSMUA_Achr6P08090_001 | Banana | nucleus | 29.81 | 32.89 |
| GSMUA_Achr1P20000_001 | Banana | nucleus | 34.87 | 32.65 |
| GSMUA_Achr10P... | Banana | nucleus | 29.59 | 32.65 |
| GSMUA_Achr6P16450_001 | Banana | nucleus | 29.59 | 30.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.26 | 30.09 |
| GSMUA_Achr1P20010_001 | Banana | plasma membrane, plastid | 33.11 | 28.67 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G00590_001 |
| EnsemblPlants:GSMUA_Achr5P00590_001 | EnsemblPlants:GSMUA_Achr5T00590_001 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:M0SUI8 |
| InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF68 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI000296FA2C |
| SEG:seg | : | : | : | : | : |
Description
Auxin response factor 17 [Source:GMGC_GENE;Acc:GSMUA_Achr5G00590_001]
Coordinates
chr5:-:338526..344926
Molecular Weight (calculated)
100827.0 Da
IEP (calculated)
6.690
GRAVY (calculated)
-0.427
Length
909 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLTSPTLTT QPQEEEPRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDSQIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLSAQEQKDP YLPADLGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELVAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNENNQ LLLGIRRANR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVISL TKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT TFPMYPSSFP LRFKRPWPTG LPFFHGGRDD EFSLNSPLMW
401: LRDGGNPALQ SLNFQGVGVT PWMQPRLGTS MLALQPDMHQ TVAAVALQEM QTMDLTKQVT PAMLQFQQPQ NTTSRSAPIL QSQILQHAQP QSHQPLLHTI
501: QGNQMQSQAQ SQFLQHHLQQ GHSFAEQQQQ QQHNLQLQIP EHQQFQQQRV LPAYQQVPYG AANLSQLSSS SQSQSTTLNM ISPSSQLKDF PDSNGNSVSA
601: SSVSPLDNIL HQISPEETSQ LLSLPRYAQP VTSNPWSSKR IAVESMLPSG AQSVLSQVEQ IGSGQPNIPL QSVVLPPFPG RECSVNQDGS MDIQNQHMFG
701: VNIDSSISVQ NGIRSLGTGV NGTNSTNIVY AACNLLRSAG NDFPINQAVN GSNGLHESGL LQSTENVDQV NSQSGTFVKV YKSGSFGRSL DITRFSSYHE
801: LRSELGHLFG LEGQLEDPLR SGWQLVFVDR EDDVLLVGDD PWQEFVNSVS CIKILSPEEV QQMGKQGVDF VNSAPIKRLQ SNGCDDYVSQ QHSRNLSAAR
901: ITSVGSFKY
101: PLSAQEQKDP YLPADLGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELVAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNENNQ LLLGIRRANR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVISL TKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT TFPMYPSSFP LRFKRPWPTG LPFFHGGRDD EFSLNSPLMW
401: LRDGGNPALQ SLNFQGVGVT PWMQPRLGTS MLALQPDMHQ TVAAVALQEM QTMDLTKQVT PAMLQFQQPQ NTTSRSAPIL QSQILQHAQP QSHQPLLHTI
501: QGNQMQSQAQ SQFLQHHLQQ GHSFAEQQQQ QQHNLQLQIP EHQQFQQQRV LPAYQQVPYG AANLSQLSSS SQSQSTTLNM ISPSSQLKDF PDSNGNSVSA
601: SSVSPLDNIL HQISPEETSQ LLSLPRYAQP VTSNPWSSKR IAVESMLPSG AQSVLSQVEQ IGSGQPNIPL QSVVLPPFPG RECSVNQDGS MDIQNQHMFG
701: VNIDSSISVQ NGIRSLGTGV NGTNSTNIVY AACNLLRSAG NDFPINQAVN GSNGLHESGL LQSTENVDQV NSQSGTFVKV YKSGSFGRSL DITRFSSYHE
801: LRSELGHLFG LEGQLEDPLR SGWQLVFVDR EDDVLLVGDD PWQEFVNSVS CIKILSPEEV QQMGKQGVDF VNSAPIKRLQ SNGCDDYVSQ QHSRNLSAAR
901: ITSVGSFKY
001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY
Arabidopsis Description
ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.