Factsheet for GSMUA_Achr6P16450_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	75.6	80.1
Os11t0523800-01	Rice	nucleus	32.42	77.32
GSMUA_Achr6P08090_001	Banana	nucleus	72.97	77.31
GSMUA_AchrUn_...	Banana	nucleus	69.87	69.0
VIT_17s0000g00320.t01	Wine grape	nucleus	61.05	61.83
OQU83539	Sorghum	nucleus	55.56	59.51
KRH59742	Soybean	nucleus	58.42	59.44
KRH41062	Soybean	nucleus	57.85	59.34
Os12t0479400-02	Rice	nucleus	56.93	59.1
PGSC0003DMT400037454	Potato	nucleus	55.1	58.02
VIT_01s0244g00150.t01	Wine grape	nucleus	51.09	58.0
KRH63855	Soybean	nucleus	55.67	57.65
Solyc12g042070.1.1	Tomato	nucleus	54.64	57.61
KRH54110	Soybean	nucleus	55.44	57.41
PGSC0003DMT400036765	Potato	nucleus	55.33	57.16
Solyc03g118290.2.1	Tomato	nucleus	55.21	56.97
AT5G62000.1	Thale cress	nucleus	55.67	56.58
CDY67247	Canola	nucleus	54.75	56.17
CDX87230	Canola	nucleus	52.92	55.8
CDX86939	Canola	nucleus	54.07	55.53
Bra010048.1-P	Field mustard	nucleus	53.95	55.35
CDY00245	Canola	nucleus	53.95	55.35
GSMUA_Achr9P08310_001	Banana	vacuole	30.81	55.24
EES17013	Sorghum	nucleus	53.04	55.18
Zm00001d049295_P001	Maize	nucleus	54.87	54.68
Zm00001d041056_P019	Maize	nucleus	52.23	54.03
Zm00001d023659_P007	Maize	nucleus	50.86	53.75
Bra035910.1-P	Field mustard	nucleus	53.61	52.7
CDY16798	Canola	nucleus	52.81	52.57
GSMUA_Achr10P...	Banana	nucleus	40.21	52.08
GSMUA_Achr6P12780_001	Banana	nucleus	40.55	50.86
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	17.41	50.84
GSMUA_AchrUn_...	Banana	nucleus	36.43	50.08
GSMUA_Achr6P07390_001	Banana	nucleus	37.11	49.47
GSMUA_Achr10P...	Banana	nucleus	37.34	48.88
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	38.95	48.78
GSMUA_Achr7P24330_001	Banana	nucleus	37.0	48.5
GSMUA_Achr2P19760_001	Banana	nucleus	37.0	48.35
GSMUA_AchrUn_...	Banana	mitochondrion	20.96	35.81
GSMUA_Achr5P26580_001	Banana	nucleus	30.36	32.84
GSMUA_Achr3P23290_001	Banana	nucleus	30.47	32.44
GSMUA_Achr5P02450_001	Banana	nucleus	30.47	32.13
GSMUA_Achr4P25960_001	Banana	nucleus	29.21	31.84
GSMUA_Achr3P10240_001	Banana	nucleus	22.57	31.77
GSMUA_Achr11P...	Banana	nucleus	29.44	31.73
GSMUA_Achr6P19850_001	Banana	nucleus	30.93	31.58
GSMUA_Achr1P08230_001	Banana	mitochondrion	23.71	31.17
GSMUA_Achr1P20040_001	Banana	nucleus	27.84	31.07
GSMUA_Achr11P...	Banana	nucleus	28.98	30.52
GSMUA_Achr11P...	Banana	nucleus	31.39	30.01
GSMUA_Achr5P00590_001	Banana	nucleus	30.81	29.59
GSMUA_Achr9P14090_001	Banana	nucleus	30.36	29.12
GSMUA_Achr9P18170_001	Banana	nucleus	28.29	28.92
GSMUA_Achr6P36980_001	Banana	nucleus	27.61	28.09
GSMUA_Achr3P05460_001	Banana	nucleus	30.7	27.54
GSMUA_Achr6P01740_001	Banana	nucleus	31.5	26.47
GSMUA_Achr8P23850_001	Banana	nucleus	30.81	25.21
GSMUA_Achr1P20000_001	Banana	nucleus	27.49	24.72
GSMUA_Achr5P05010_001	Banana	nucleus	24.05	24.11
GSMUA_Achr8P13620_001	Banana	nucleus	12.26	22.11
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	26.35	21.9

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G16450_001
EnsemblPlants:GSMUA_Achr6P16450_001	EnsemblPlants:GSMUA_Achr6T16450_001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0T7J3
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF40	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI00029572F8
SEG:seg	:	:	:	:	:

Description

Auxin response factor 24 [Source:GMGC_GENE;Acc:GSMUA_Achr6G16450_001]

Coordinates

chr6:+:10964006..10969498

Molecular Weight (calculated)

96735.3 Da

IEP (calculated)

7.191

GRAVY (calculated)

-0.542

Length

873 amino acids

Sequence
(BLAST)

001: MASSELSVKG SSGGQGQSLS SGCSEMHEGP SVKVGGDAEG SLGFSGGAVC GKDALYTELW LACAGPLVTI PRVGEKVFYF PQGHIEQVEA STNQGADQQM
101: PVYNLPWKIL CRVMNVDLKA EPDTDEVFAQ VTLLPVSKLD ENTVEKEMLS TPPPRPHVYS FCKTLTASDT STHGGFSVLR RHADECLPPL DMSRQPPSQE
201: LVAKDLHRVE WRFRHIFRGQ PRRHLLQSGW SVFVSSKRLV AGDAFIFLRG ENGELRVGVR RAMRQQANVP SSVISSHSMH LGVLATAWHA VNTGTMFTVY
301: YKPRTSPSEF IVPFDQYVES IKSNHSVGMR FKMRFEGEEA PEQRFTGTIV GIGDADPSRW PGSKWKSLKV RWDEPSSIPR PERVSPWKIE PVLTPPLNPL
401: PMPRTKKPRT TSFPCSPDSS VPKREDAAPK VTAEPSQSYG APRVLQGPEM MTLRSSYADS NESGATHKPV VWSMNDEEKN DVPTRRRLGS DSRMLIKRHE
501: QTYNGIFSGY CPPDSSGFQT PFFEQTPGDK NILKPHFQVQ EAKHNYSPGS WSLIPPNSNF GMSDHDFKTT AQIGEVSYQK AGNCRYGTRG FFSELQSLGS
601: IQNSPNWFTH LLPDSQIENM AQPRVVKPLP MLPSQTDVAK PKANSGYKLF GFHLNSNPVI SESVMPRSNS ADILMPHSHP EAALPYQQGL EVDKHSESSV
701: TERLVGAAPT NGETEKLIHV SPRTAQDFQN KLQNGSTRSC TKVHKQGIAL GRSVDLTKFN GYDELIAELD HMFEFEGALV SPNKSWLVVY TDNEGDMMLV
801: GDDPWKEFCN MVHKIYIYTR EEVHRMNPGT LSSRVEESPA TSDGRIAGKE PKGPVPAAIS ENSERCPSIG TAF

Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.