Factsheet for Solyc12g042070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g072300.2.1
Solyc03g006070.2.1
Solyc05g008850.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	Solyc05g008850.2.1	AT1G15050.1	21734647
AT5G62000.1	Solyc02g072300.2.1	AT4G18710.1	18599455
AT5G62000.1	Solyc03g006070.2.1	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037454	Potato	nucleus	96.26	96.14
Solyc03g118290.2.1	Tomato	nucleus	78.5	76.83
Os11t0523800-01	Rice	nucleus	32.49	73.5
VIT_17s0000g00320.t01	Wine grape	nucleus	72.83	69.95
KRH54110	Soybean	nucleus	65.94	64.77
KRH41062	Soybean	nucleus	66.55	64.75
KRH59742	Soybean	nucleus	66.79	64.45
KRH63855	Soybean	nucleus	65.58	64.41
CDX87230	Canola	nucleus	62.8	62.8
AT5G62000.1	Thale cress	nucleus	64.86	62.51
CDX86939	Canola	nucleus	63.53	61.88
Bra010048.1-P	Field mustard	nucleus	63.53	61.81
CDY00245	Canola	nucleus	63.53	61.81
CDY67247	Canola	nucleus	62.32	60.63
CDY16798	Canola	nucleus	62.68	59.18
GSMUA_Achr6P08090_001	Banana	nucleus	58.57	58.86
Bra035910.1-P	Field mustard	nucleus	62.92	58.67
GSMUA_Achr10P...	Banana	nucleus	57.13	57.4
TraesCS3D01G434700.1	Wheat	nucleus	53.14	55.28
TraesCS3B01G475800.1	Wheat	nucleus	52.78	54.9
TraesCS3A01G442000.1	Wheat	nucleus	52.78	54.83
GSMUA_Achr6P16450_001	Banana	nucleus	57.61	54.64
OQU83539	Sorghum	nucleus	53.74	54.6
Os01t0927600-01	Rice	nucleus	53.14	54.46
GSMUA_AchrUn_...	Banana	nucleus	56.76	53.17
KXG34038	Sorghum	nucleus	51.69	52.84
Os12t0479400-02	Rice	nucleus	53.62	52.79
Zm00001d011953_P002	Maize	nucleus	51.33	52.73
Solyc01g103050.2.1	Tomato	nucleus	41.3	52.29
Zm00001d042267_P003	Maize	nucleus	51.33	51.96
Solyc12g006350.1.1	Tomato	nucleus	11.59	51.61
TraesCS3B01G486000.2	Wheat	nucleus	51.45	51.57
TraesCS3A01G449300.3	Wheat	nucleus	51.57	51.51
HORVU3Hr1G097200.10	Barley	nucleus	51.45	50.41
Zm00001d049295_P001	Maize	nucleus	53.26	50.34
EES17013	Sorghum	nucleus	50.85	50.18
Zm00001d041056_P019	Maize	nucleus	50.6	49.64
HORVU3Hr1G096410.4	Barley	nucleus, plastid	48.19	49.63
Zm00001d023659_P007	Maize	nucleus	48.91	49.03
TraesCS3D01G442000.7	Wheat	nucleus	52.05	48.65
HORVU3Hr1G096510.3	Barley	plastid	48.31	47.96
Solyc01g096070.2.1	Tomato	nucleus	39.49	47.46
Solyc08g082630.2.1	Tomato	nucleus	35.87	46.12
Solyc08g008380.2.1	Tomato	nucleus	37.08	44.95
Solyc07g043620.2.1	Tomato	nucleus	25.24	39.81
Solyc11g069190.1.1	Tomato	nucleus	32.25	32.92
Solyc03g031970.2.1	Tomato	nucleus	30.8	30.21
Solyc02g037530.2.1	Tomato	nucleus	29.95	29.45
Solyc04g081240.2.1	Tomato	nucleus	30.92	27.53
Solyc07g016180.2.1	Tomato	nucleus	34.42	25.63
Solyc05g047460.2.1	Tomato	nucleus	32.97	24.89
Solyc07g042260.2.1	Tomato	nucleus	31.28	22.78

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	EMBL:CM001075	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009835	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
UniProt:K4DF01	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF8	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
EnsemblPlantsGene:Solyc12g042070.1	EnsemblPlants:Solyc12g042070.1.1	UniParc:UPI000276A991	SEG:seg	:	:

Description

ARF2BAuxin response factor 2B [Source:UniProtKB/Swiss-Prot;Acc:K4DF01]

Coordinates

chr12:+:40782124..40786819

Molecular Weight (calculated)

92473.3 Da

IEP (calculated)

6.914

GRAVY (calculated)

-0.582

Length

828 amino acids

Sequence
(BLAST)

001: MATSENCRNA AGAGKVDAEK ALYTELWRAC AGPLVTVPCE GELVFYFPQG HIEQVEASTN QASDQQMPVY NLPSKILCRV INVLLKAEPD TDEVYAQVTL
101: LPEPNQDENV VSKEPMPSPP PRFHVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS RQPPTQELVA KDLHANEWRF RHIFRGQPRR HLLQSGWSVF
201: VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQQGNAPSSV ISSHSMHLGV LATAWHAIQT KTLFTVYYKP RTSPADFIVP YDQYMESLKN NYSIGMRFKM
301: RFEGEEAPEQ RFTGTIVGIE NADLKRWPES KWRCLKVRWD ETSAIPRPDR VSPWKVEPAL SPPALNPLPI PRQKRPRSNV LPSSPDSSVL TREGSSKVVV
401: DTSQASGFSR VLQGQEISTL RGNFVENNES DSSEKPPIWQ PLLDDEKADV HSASRKCISD KRLPLGRPES SFTDLLSGFG GQSSSSHGFH SPTGGQTAPA
501: SWVKRQALDK ETDFSLLAKQ WSLVSSGLSL NLMESGLKGA DTLYQMRGTS RLNCFNEYPT FPGHRPDNQQ GNWLMPPSVL PYIQMSAHSG EIMPKPMASP
601: QPEAMKPKEG NCKLFGIPLV SKCATIDPVM LRKNSPIHST SNMHFGIHPH QFPIIESDQR SEQSKGSKLP DDGFIVHDQE EQFQTSHPGT RDREGKGLVH
701: STRSCTKVHK QGTALGRSVD LAKFNNYEEL IAELDHIFDF NGELKARNKN WLVVYTDDEG DMMLVGDDPW EFCGMVRKIF IYTKDEVQRM NPGTLNSKGE
801: DNSSVAEGSD AKEVKNLQLH IDSSPEDS

Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.