Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010048.1-P | Field mustard | nucleus | 97.06 | 96.94 |
| CDY00245 | Canola | nucleus | 96.94 | 96.83 |
| AT5G62000.1 | Thale cress | nucleus | 88.0 | 87.08 |
| CDX87230 | Canola | nucleus | 84.12 | 86.35 |
| CDY67247 | Canola | nucleus | 84.82 | 84.72 |
| CDY16798 | Canola | nucleus | 83.76 | 81.19 |
| Os11t0523800-01 | Rice | nucleus | 32.24 | 74.86 |
| VIT_17s0000g00320.t01 | Wine grape | nucleus | 68.24 | 67.29 |
| KRH41062 | Soybean | nucleus | 64.59 | 64.51 |
| KRH54110 | Soybean | nucleus | 63.88 | 64.41 |
| KRH63855 | Soybean | nucleus | 63.76 | 64.29 |
| KRH59742 | Soybean | nucleus | 64.35 | 63.75 |
| PGSC0003DMT400037454 | Potato | nucleus | 62.12 | 63.69 |
| Solyc12g042070.1.1 | Tomato | nucleus | 61.88 | 63.53 |
| PGSC0003DMT400036765 | Potato | nucleus | 61.88 | 62.25 |
| Solyc03g118290.2.1 | Tomato | nucleus | 61.88 | 62.17 |
| GSMUA_Achr6P08090_001 | Banana | nucleus | 56.35 | 58.13 |
| GSMUA_Achr10P... | Banana | nucleus | 54.82 | 56.55 |
| CDY27291 | Canola | nucleus | 39.41 | 54.12 |
| GSMUA_Achr6P16450_001 | Banana | nucleus | 55.53 | 54.07 |
| TraesCS3D01G434700.1 | Wheat | nucleus | 50.47 | 53.89 |
| TraesCS3A01G442000.1 | Wheat | nucleus | 50.47 | 53.83 |
| TraesCS3B01G475800.1 | Wheat | nucleus | 50.24 | 53.64 |
| CDY47607 | Canola | nucleus | 37.53 | 52.81 |
| Os01t0927600-01 | Rice | nucleus | 50.12 | 52.72 |
| KXG34038 | Sorghum | nucleus | 50.24 | 52.72 |
| OQU83539 | Sorghum | nucleus | 50.47 | 52.64 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.71 | 52.6 |
| Zm00001d011953_P002 | Maize | nucleus | 49.76 | 52.48 |
| CDX80025 | Canola | nucleus | 36.0 | 52.4 |
| Zm00001d042267_P003 | Maize | nucleus | 49.65 | 51.59 |
| CDY10978 | Canola | nucleus | 37.76 | 51.36 |
| CDX95705 | Canola | nucleus | 32.82 | 51.19 |
| Os12t0479400-02 | Rice | nucleus | 50.59 | 51.13 |
| CDY50434 | Canola | nucleus | 37.53 | 51.04 |
| CDY65065 | Canola | nucleus | 39.65 | 50.98 |
| CDY33603 | Canola | nucleus | 39.65 | 50.98 |
| TraesCS3B01G486000.2 | Wheat | nucleus | 49.29 | 50.73 |
| TraesCS3A01G449300.3 | Wheat | nucleus | 49.29 | 50.54 |
| CDY03502 | Canola | nucleus | 35.18 | 49.83 |
| HORVU3Hr1G097200.10 | Barley | nucleus | 49.18 | 49.47 |
| Zm00001d049295_P001 | Maize | nucleus | 50.47 | 48.97 |
| EES17013 | Sorghum | nucleus | 48.12 | 48.75 |
| Zm00001d023659_P007 | Maize | nucleus | 47.06 | 48.43 |
| HORVU3Hr1G096410.4 | Barley | nucleus, plastid | 45.41 | 48.01 |
| Zm00001d041056_P019 | Maize | nucleus | 47.06 | 47.39 |
| TraesCS3D01G442000.7 | Wheat | nucleus | 49.18 | 47.18 |
| HORVU3Hr1G096510.3 | Barley | plastid | 45.76 | 46.64 |
| CDY67714 | Canola | nucleus | 25.76 | 41.24 |
| CDX94748 | Canola | endoplasmic reticulum, vacuole | 17.65 | 40.54 |
| CDY21993 | Canola | nucleus | 25.88 | 40.37 |
| CDY48583 | Canola | nucleus | 25.88 | 40.22 |
| CDY69758 | Canola | nucleus | 19.65 | 40.14 |
| CDY53570 | Canola | nucleus | 23.53 | 39.92 |
| CDY41720 | Canola | nucleus | 25.53 | 39.45 |
| CDX94777 | Canola | nucleus | 25.76 | 39.32 |
| CDY49005 | Canola | nucleus | 25.65 | 39.14 |
| CDY36940 | Canola | nucleus | 25.18 | 38.63 |
| CDY55738 | Canola | nucleus | 24.0 | 37.78 |
| CDY54111 | Canola | nucleus | 25.06 | 37.57 |
| CDY24168 | Canola | nucleus | 24.82 | 37.48 |
| CDY31545 | Canola | nucleus | 32.35 | 36.33 |
| CDX80168 | Canola | nucleus | 31.88 | 35.7 |
| CDY12048 | Canola | nucleus | 33.18 | 33.29 |
| CDY39274 | Canola | nucleus | 30.47 | 33.25 |
| CDY07460 | Canola | nucleus | 30.35 | 33.03 |
| CDX90245 | Canola | nucleus | 33.06 | 32.98 |
| CDY53537 | Canola | nucleus | 30.82 | 32.19 |
| CDX74594 | Canola | nucleus | 30.82 | 31.99 |
| CDY02285 | Canola | nucleus | 32.82 | 31.96 |
| CDY09598 | Canola | nucleus | 32.59 | 31.84 |
| CDX94484 | Canola | nucleus | 22.71 | 30.83 |
| CDX83741 | Canola | nucleus | 29.06 | 29.2 |
| CDY62586 | Canola | nucleus | 29.06 | 29.2 |
| CDY01393 | Canola | nucleus | 29.29 | 28.79 |
| CDY61164 | Canola | nucleus | 29.06 | 28.69 |
| CDY29392 | Canola | nucleus | 29.41 | 28.54 |
| CDY39348 | Canola | nucleus | 29.41 | 28.44 |
| CDX94528 | Canola | nucleus | 22.0 | 27.95 |
| CDX83778 | Canola | nucleus | 31.76 | 26.47 |
| CDX96672 | Canola | nucleus | 31.65 | 26.37 |
| CDY26690 | Canola | nucleus | 32.24 | 26.12 |
| CDY41030 | Canola | nucleus | 31.88 | 25.61 |
| CDX92437 | Canola | nucleus | 31.29 | 25.58 |
| CDY16560 | Canola | nucleus | 30.82 | 25.14 |
| CDY24162 | Canola | nucleus | 19.06 | 24.92 |
| CDY45069 | Canola | nucleus | 30.82 | 23.54 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078DEY3 | InterPro:AUX/IAA_dom |
| InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDX86939 | ProteinID:CDX86939 | ProteinID:CDX86939.1 | InterPro:DNA-bd_pseudobarrel_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00145752001 | InterPro:IPR000270 | InterPro:IPR003340 |
| InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 |
| PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF8 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 |
| UniParc:UPI0004EDF2F2 | SEG:seg | : | : | : | : |
Description
BnaC03g52090D
Coordinates
chrLK031848:-:609284..614292
Molecular Weight (calculated)
94683.2 Da
IEP (calculated)
6.877
GRAVY (calculated)
-0.648
Length
850 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSEVSMKG NRGRGENFSS AGYSDPTVAG EAQKTQSNRS VAAERVVDPE AALYRELWHA CAGPLVTVPR QDDRVFYFPQ GHIEQVEAST NQAAEQQMPL
101: YDLPSKILCR VINVDLKAEA DTDEVYAQIT LLPEPVQDEN SIEKEAPPPP PPRFQVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM SRQPPTQELV
201: AKDLHASEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQQGNVPSS VISSHSMHLG VLATAWHAIS TGTMFTVYYK
301: PRTSPSEFIV PFDQYTESVK NNYSIGMRFK MRFEGEEAPE QRFTGTIVGI EDSDPTRWAK SKWRSLKACV RWDETTSIPR PDRVSPWKIE PALSPPALSP
401: VPMPRPKRPR SNLASSTPDS SMRIREGSSK ANMDPLPASG LSRVLQGQEY PTLRTKHVES VECDAPENSV VWQSSTDDDK VDVISASRRY ENWISSGRHG
501: PTCTDLLSGF GTNIEPPHGH QIPFYDRLSS PPSVAARKIL SDQDGKFEYL ANQWMMHSGL SLKLHESPKV PAASDASFQG IGNPNYGEYA LPRAVTTENA
601: AGNWPIRPRA LNYFEEAVHA QAREHVTKRP AVVQEEAAKP RDGNCRLFGI PLVNNVNGTD TTLSQRNNLN DPAGPTQMAS PKVQDLSDQS KGSKSTNDHR
701: EQGRPFPVSK PHPKDVQTKT NSCRSCTKVQ KQGIALGRSV DLSKFQNYEE LVTELDRLFE FNGELMAPKK DWLIVYTDDE NDMMLVGDDP WQEFCCMVRK
801: IFIYTKEEVR KMNPGTLCCR NEEEPVVGEG SDAKDAKSAS NPSLSSAGNS
101: YDLPSKILCR VINVDLKAEA DTDEVYAQIT LLPEPVQDEN SIEKEAPPPP PPRFQVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM SRQPPTQELV
201: AKDLHASEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQQGNVPSS VISSHSMHLG VLATAWHAIS TGTMFTVYYK
301: PRTSPSEFIV PFDQYTESVK NNYSIGMRFK MRFEGEEAPE QRFTGTIVGI EDSDPTRWAK SKWRSLKACV RWDETTSIPR PDRVSPWKIE PALSPPALSP
401: VPMPRPKRPR SNLASSTPDS SMRIREGSSK ANMDPLPASG LSRVLQGQEY PTLRTKHVES VECDAPENSV VWQSSTDDDK VDVISASRRY ENWISSGRHG
501: PTCTDLLSGF GTNIEPPHGH QIPFYDRLSS PPSVAARKIL SDQDGKFEYL ANQWMMHSGL SLKLHESPKV PAASDASFQG IGNPNYGEYA LPRAVTTENA
601: AGNWPIRPRA LNYFEEAVHA QAREHVTKRP AVVQEEAAKP RDGNCRLFGI PLVNNVNGTD TTLSQRNNLN DPAGPTQMAS PKVQDLSDQS KGSKSTNDHR
701: EQGRPFPVSK PHPKDVQTKT NSCRSCTKVQ KQGIALGRSV DLSKFQNYEE LVTELDRLFE FNGELMAPKK DWLIVYTDDE NDMMLVGDDP WQEFCCMVRK
801: IFIYTKEEVR KMNPGTLCCR NEEEPVVGEG SDAKDAKSAS NPSLSSAGNS
001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
Arabidopsis Description
ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.