Factsheet for Os01t0927600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0205700-01
Os05t0207500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	Os01t0205700-01	AT4G18710.1	18599455
AT5G62000.1	Os05t0207500-01	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G434700.1	Wheat	nucleus	81.81	83.04
TraesCS3B01G475800.1	Wheat	nucleus	81.81	83.04
TraesCS3A01G442000.1	Wheat	nucleus	81.68	82.81
KXG34038	Sorghum	nucleus	79.08	78.89
TraesCS3B01G486000.2	Wheat	nucleus	80.2	78.45
TraesCS3A01G449300.3	Wheat	nucleus	79.83	77.8
Zm00001d011953_P002	Maize	nucleus	77.6	77.79
Zm00001d042267_P003	Maize	nucleus	76.98	76.04
HORVU3Hr1G096410.4	Barley	nucleus, plastid	75.12	75.5
HORVU3Hr1G097200.10	Barley	nucleus	78.34	74.91
HORVU3Hr1G096510.3	Barley	plastid	76.11	73.74
TraesCS3D01G442000.7	Wheat	nucleus	79.83	72.8
Os11t0523800-01	Rice	nucleus	31.68	69.95
VIT_01s0244g00150.t01	Wine grape	nucleus	51.11	53.71
VIT_17s0000g00320.t01	Wine grape	nucleus	56.81	53.25
Solyc12g042070.1.1	Tomato	nucleus	54.46	53.14
PGSC0003DMT400037454	Potato	nucleus	54.21	52.83
Solyc03g118290.2.1	Tomato	nucleus	54.83	52.36
PGSC0003DMT400036765	Potato	nucleus	54.7	52.31
KRH63855	Soybean	nucleus	53.84	51.6
KRH41062	Soybean	nucleus	54.33	51.59
KRH54110	Soybean	nucleus	53.71	51.48
CDX87230	Canola	nucleus	52.72	51.45
KRH59742	Soybean	nucleus	54.46	51.28
CDY67247	Canola	nucleus	53.59	50.88
AT5G62000.1	Thale cress	nucleus	53.84	50.64
Bra010048.1-P	Field mustard	nucleus	52.97	50.29
CDY00245	Canola	nucleus	52.97	50.29
CDX86939	Canola	nucleus	52.72	50.12
Os12t0479400-02	Rice	nucleus	51.98	49.94
Os02t0557200-01	Rice	nucleus	41.34	49.26
Os04t0442000-01	Rice	nucleus	40.47	48.59
CDY16798	Canola	nucleus	52.6	48.46
Bra035910.1-P	Field mustard	nucleus	52.85	48.09
Os01t0236300-01	Rice	nucleus	33.54	38.77
Os08t0520550-01	Rice	nucleus	24.5	31.08
Os04t0671900-01	Rice	nucleus	31.06	30.68
Os12t0613700-01	Rice	nucleus	32.67	29.37
Os06t0677800-01	Rice	nucleus	33.04	29.12
Os02t0164900-01	Rice	nucleus	32.67	29.07
Os06t0702600-01	Rice	nucleus	32.67	26.64
Os04t0664400-01	Rice	nucleus	28.84	25.33
Os06t0196700-02	Rice	nucleus	32.55	24.93
Os02t0141100-00	Rice	nucleus	33.29	24.1
Os08t0520500-01	Rice	cytosol	1.11	18.0

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:4326957	EMBL:AB071293
EMBL:AK072309	InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:BAD88200.1	ProteinID:BAF07184.1
ProteinID:BAS76004.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EnsemblPlantsGene:Os01g0927600	EnsemblPlants:Os01t0927600-01	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF8
UniProt:Q5JK20	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI00004C2BCC	RefSeq:XP_015650953.1
SEG:seg	:	:	:	:	:

Description

AUXIN RESPONSE FACTOR 2Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-BP). (Os01t0927600-01)

Coordinates

chr1:+:40695664..40700914

Molecular Weight (calculated)

90859.5 Da

IEP (calculated)

6.478

GRAVY (calculated)

-0.715

Length

808 amino acids

Sequence
(BLAST)

001: MPPAAMAPPP PPQGSSTGDP LYDELWHACA GPLVTVPRVG DLVFYFPQGH IEQVEASMNQ VADSQMRLYD LPSKLLCRVL NVELKAEQDT DEVYAQVMLM
101: PEPEQNEMAV EKTTPTSGPV QARPPVRSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TQSPPTQELV AKDLHSMDWR FRHIFRGQPR RHLLQSGWSV
201: FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQLSNVPSS VISSQSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESVK NNYSVGMRFR
301: MRFEGEEAPE QRFTGTIIGS ENLDPVWPES SWRSLKVRWD EPSTIPRPDR VSPWKIEPAS SPPVNPLPLS RVKRPRPNAP PASPESPILT KEAATKVDTD
401: PAQAQRSQNS TVLQGQEQMT LRSNLTESND SDVTAHKPMM WSPSPNAAKA HPLTFQQRPP MDNWMQLGRR ETDFKDVRSG SQSFGDSPGF FMQNFDEAPN
501: RLTSFKNQFQ DQGSARHFSD PYYYVSPQPS LTVESSTQMH TDSKELHFWN GQSTVYGNSR DRPQNFRFEQ NSSSWLNQSF ARPEQPRVIR PHASIAPVEL
601: EKTEGSGFKI FGFKVDTTNA PNNHLSSPMA ATHEPMLQTP SSLNQLQPVQ TDCIPEVSVS TAGTATENEK SGQQAQQSSK DVQSKTQVAS TRSCTKVHKQ
701: GVALGRSVDL SKFSNYDELK AELDKMFEFD GELVSSNKNW QIVYTDNEGD MMLVGDDPWE EFCSIVRKIY IYTKEEVQKM NSKSNAPRKD DSSENEKGHL
801: PMPNKSDN

Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.