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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400036765 Potato nucleus 97.16 97.28
Solyc12g042070.1.1 Tomato nucleus 76.83 78.5
Os11t0523800-01 Rice nucleus 31.91 73.77
VIT_17s0000g00320.t01 Wine grape nucleus 71.99 70.65
KRH59742 Soybean nucleus 65.72 64.8
KRH41062 Soybean nucleus 64.66 64.28
KRH63855 Soybean nucleus 63.71 63.94
KRH54110 Soybean nucleus 63.59 63.82
CDX87230 Canola nucleus 60.87 62.2
AT5G62000.1 Thale cress nucleus 63.12 62.17
Bra010048.1-P Field mustard nucleus 62.29 61.93
CDY00245 Canola nucleus 62.29 61.93
CDX86939 Canola nucleus 62.17 61.88
CDY67247 Canola nucleus 60.64 60.28
GSMUA_Achr6P08090_001 Banana nucleus 57.68 59.22
CDY16798 Canola nucleus 60.4 58.27
Bra035910.1-P Field mustard nucleus 60.99 58.11
GSMUA_Achr10P... Banana nucleus 56.5 58.01
TraesCS3B01G475800.1 Wheat nucleus 52.25 55.53
TraesCS3D01G434700.1 Wheat nucleus 52.25 55.53
GSMUA_Achr6P16450_001 Banana nucleus 56.97 55.21
OQU83539 Sorghum nucleus 53.07 55.09
TraesCS3A01G442000.1 Wheat nucleus 51.89 55.08
Os01t0927600-01 Rice nucleus 52.36 54.83
GSMUA_AchrUn_... Banana nucleus 55.91 53.51
Os12t0479400-02 Rice nucleus 53.07 53.39
Zm00001d011953_P002 Maize nucleus 50.83 53.35
KXG34038 Sorghum nucleus 51.06 53.33
Solyc01g103050.2.1 Tomato nucleus 40.66 52.6
TraesCS3A01G449300.3 Wheat nucleus 51.18 52.23
Zm00001d042267_P003 Maize nucleus 50.35 52.08
TraesCS3B01G486000.2 Wheat nucleus 50.59 51.82
Solyc12g006350.1.1 Tomato nucleus 11.35 51.61
EES17013 Sorghum nucleus 50.95 51.37
HORVU3Hr1G097200.10 Barley nucleus 50.71 50.77
Zm00001d041056_P019 Maize nucleus 50.59 50.71
Zm00001d023659_P007 Maize nucleus 49.41 50.61
Zm00001d049295_P001 Maize nucleus 52.25 50.46
HORVU3Hr1G096410.4 Barley nucleus, plastid 47.52 50.0
Solyc01g096070.2.1 Tomato nucleus 40.07 49.2
TraesCS3D01G442000.7 Wheat nucleus 51.18 48.87
HORVU3Hr1G096510.3 Barley plastid 47.87 48.56
Solyc08g082630.2.1 Tomato nucleus 35.93 47.2
Solyc08g008380.2.1 Tomato nucleus 37.35 46.27
Solyc07g043620.2.1 Tomato nucleus 24.94 40.19
Solyc11g069190.1.1 Tomato nucleus 32.27 33.66
Solyc03g031970.2.1 Tomato nucleus 30.14 30.21
Solyc02g037530.2.1 Tomato nucleus 29.91 30.05
Solyc04g081240.2.1 Tomato nucleus 30.97 28.17
Solyc07g016180.2.1 Tomato nucleus 33.33 25.36
Solyc05g047460.2.1 Tomato nucleus 31.56 24.34
Solyc07g042260.2.1 Tomato nucleus 31.21 23.22
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90InterPro:AUX/IAA_domInterPro:Auxin_resp
InterPro:B3_DNA-bdEMBL:CM001066InterPro:DNA-bd_pseudobarrel_sfEMBL:DQ340255GO:GO:0000003GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154
GO:GO:0007165GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719
GO:GO:0009725GO:GO:0009734GO:GO:0009791GO:GO:0009835GO:GO:0009836GO:GO:0009908
GO:GO:0009911GO:GO:0009987GO:GO:0042803GO:GO:0046982InterPro:IPR000270InterPro:IPR003340
InterPro:IPR015300InterPro:PB1_domPFAM:PF02309PFAM:PF02362PFAM:PF06507PFscan:PS50863
PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF8UniProt:Q2LAJ3SMART:SM01019SUPFAM:SSF101936
SUPFAM:SSF54277EnsemblPlantsGene:Solyc03g118290.2EnsemblPlants:Solyc03g118290.2.1UniParc:UPI0000684199SEG:seg:
Description
ARF2AAuxin response factor 2A [Source:UniProtKB/Swiss-Prot;Acc:Q2LAJ3]
Coordinates
chr3:+:67215635..67223106
Molecular Weight (calculated)
94018.7 Da
IEP (calculated)
6.750
GRAVY (calculated)
-0.595
Length
846 amino acids
Sequence
(BLAST)
001: MAASEVSIQG YSEPSDGSRP VSETGRSSSG VGIVDADTAL YTELWRSCAG PLVTVPREGE LVYYFPQGHI EQVEASTNQV ADQQMPLYNL PSKILCRVVN
101: VLLKAEPDTD EVYAQVTLMP EPNQDENAVK KEPMRPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE CLPQLDMSRQ PPTQELVAKD LHGNEWRFRH
201: IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QGNAPSSVIS SHSMHLGVLA TAWHAIQTKT MFTVYYKPRT SPAEFIVPYD
301: HYMESVKNNY SIGMRFKMRF EGEEAPEQRF TGTIVGIEDA DPQRWLESKW RCLKVRWDEN SSIPRPDRVS PWKIEPALSP PALNVPPVAR PKRPRSSILP
401: TSPDSSVLTR EGSSRATADH SQASGFPRVL QGQELSTFRG GFAEINETDL SEKPMIWQTS VNDEKNDIHS ASKRYLPDKW LPLGRPESSL TDLLSGFGSS
501: HGFCLPSADQ AAFGARLVKQ QTQDQEKDFS LLGKPWSLLS SGLSLNLMDS GSKAPGIGGD TPYQMRGDAR YSGYGEFSVL PGHRVANQQG SWIMPQPVSP
601: YMQLSSHSRE MMHKPSVVKQ PEAVKPKEGN YKLFGIPLTS NVCTDAVMMR KSSLIDPASD MNIGIHPHQS LATDSDQRSE QSKGSKVDDG VAANDHDKQF
701: HTFHLAARDK DGKGHSSSTR SCTKVHKQGT ALGRSVDLAK FNNYDELIAE LDQLFDFNGE LKARSKSWLV VYTDDEGDMM LVGDDPWQEF CGMVRKIFIY
801: TKEEVQRMNP GTLNSKGEDT SSVAEGSDAK EVKNLQLPSE SGQAES
Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)
001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
Arabidopsis Description
ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.