Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc02g072300.2.1 | |
Solyc03g006070.2.1 | |
Solyc05g008850.2.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G62000.1 | Solyc05g008850.2.1 | AT1G15050.1 | 21734647 |
AT5G62000.1 | Solyc02g072300.2.1 | AT4G18710.1 | 18599455 |
AT5G62000.1 | Solyc03g006070.2.1 | AT4G18710.1 | 18599455 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400036765 | Potato | nucleus | 97.16 | 97.28 |
Solyc12g042070.1.1 | Tomato | nucleus | 76.83 | 78.5 |
Os11t0523800-01 | Rice | nucleus | 31.91 | 73.77 |
VIT_17s0000g00320.t01 | Wine grape | nucleus | 71.99 | 70.65 |
KRH59742 | Soybean | nucleus | 65.72 | 64.8 |
KRH41062 | Soybean | nucleus | 64.66 | 64.28 |
KRH63855 | Soybean | nucleus | 63.71 | 63.94 |
KRH54110 | Soybean | nucleus | 63.59 | 63.82 |
CDX87230 | Canola | nucleus | 60.87 | 62.2 |
AT5G62000.1 | Thale cress | nucleus | 63.12 | 62.17 |
Bra010048.1-P | Field mustard | nucleus | 62.29 | 61.93 |
CDY00245 | Canola | nucleus | 62.29 | 61.93 |
CDX86939 | Canola | nucleus | 62.17 | 61.88 |
CDY67247 | Canola | nucleus | 60.64 | 60.28 |
GSMUA_Achr6P08090_001 | Banana | nucleus | 57.68 | 59.22 |
CDY16798 | Canola | nucleus | 60.4 | 58.27 |
Bra035910.1-P | Field mustard | nucleus | 60.99 | 58.11 |
GSMUA_Achr10P... | Banana | nucleus | 56.5 | 58.01 |
TraesCS3B01G475800.1 | Wheat | nucleus | 52.25 | 55.53 |
TraesCS3D01G434700.1 | Wheat | nucleus | 52.25 | 55.53 |
GSMUA_Achr6P16450_001 | Banana | nucleus | 56.97 | 55.21 |
OQU83539 | Sorghum | nucleus | 53.07 | 55.09 |
TraesCS3A01G442000.1 | Wheat | nucleus | 51.89 | 55.08 |
Os01t0927600-01 | Rice | nucleus | 52.36 | 54.83 |
GSMUA_AchrUn_... | Banana | nucleus | 55.91 | 53.51 |
Os12t0479400-02 | Rice | nucleus | 53.07 | 53.39 |
Zm00001d011953_P002 | Maize | nucleus | 50.83 | 53.35 |
KXG34038 | Sorghum | nucleus | 51.06 | 53.33 |
Solyc01g103050.2.1 | Tomato | nucleus | 40.66 | 52.6 |
TraesCS3A01G449300.3 | Wheat | nucleus | 51.18 | 52.23 |
Zm00001d042267_P003 | Maize | nucleus | 50.35 | 52.08 |
TraesCS3B01G486000.2 | Wheat | nucleus | 50.59 | 51.82 |
Solyc12g006350.1.1 | Tomato | nucleus | 11.35 | 51.61 |
EES17013 | Sorghum | nucleus | 50.95 | 51.37 |
HORVU3Hr1G097200.10 | Barley | nucleus | 50.71 | 50.77 |
Zm00001d041056_P019 | Maize | nucleus | 50.59 | 50.71 |
Zm00001d023659_P007 | Maize | nucleus | 49.41 | 50.61 |
Zm00001d049295_P001 | Maize | nucleus | 52.25 | 50.46 |
HORVU3Hr1G096410.4 | Barley | nucleus, plastid | 47.52 | 50.0 |
Solyc01g096070.2.1 | Tomato | nucleus | 40.07 | 49.2 |
TraesCS3D01G442000.7 | Wheat | nucleus | 51.18 | 48.87 |
HORVU3Hr1G096510.3 | Barley | plastid | 47.87 | 48.56 |
Solyc08g082630.2.1 | Tomato | nucleus | 35.93 | 47.2 |
Solyc08g008380.2.1 | Tomato | nucleus | 37.35 | 46.27 |
Solyc07g043620.2.1 | Tomato | nucleus | 24.94 | 40.19 |
Solyc11g069190.1.1 | Tomato | nucleus | 32.27 | 33.66 |
Solyc03g031970.2.1 | Tomato | nucleus | 30.14 | 30.21 |
Solyc02g037530.2.1 | Tomato | nucleus | 29.91 | 30.05 |
Solyc04g081240.2.1 | Tomato | nucleus | 30.97 | 28.17 |
Solyc07g016180.2.1 | Tomato | nucleus | 33.33 | 25.36 |
Solyc05g047460.2.1 | Tomato | nucleus | 31.56 | 24.34 |
Solyc07g042260.2.1 | Tomato | nucleus | 31.21 | 23.22 |
Protein Annotations
MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
InterPro:B3_DNA-bd | EMBL:CM001066 | InterPro:DNA-bd_pseudobarrel_sf | EMBL:DQ340255 | GO:GO:0000003 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009791 | GO:GO:0009835 | GO:GO:0009836 | GO:GO:0009908 |
GO:GO:0009911 | GO:GO:0009987 | GO:GO:0042803 | GO:GO:0046982 | InterPro:IPR000270 | InterPro:IPR003340 |
InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 |
PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF8 | UniProt:Q2LAJ3 | SMART:SM01019 | SUPFAM:SSF101936 |
SUPFAM:SSF54277 | EnsemblPlantsGene:Solyc03g118290.2 | EnsemblPlants:Solyc03g118290.2.1 | UniParc:UPI0000684199 | SEG:seg | : |
Description
ARF2AAuxin response factor 2A [Source:UniProtKB/Swiss-Prot;Acc:Q2LAJ3]
Coordinates
chr3:+:67215635..67223106
Molecular Weight (calculated)
94018.7 Da
IEP (calculated)
6.750
GRAVY (calculated)
-0.595
Length
846 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASEVSIQG YSEPSDGSRP VSETGRSSSG VGIVDADTAL YTELWRSCAG PLVTVPREGE LVYYFPQGHI EQVEASTNQV ADQQMPLYNL PSKILCRVVN
101: VLLKAEPDTD EVYAQVTLMP EPNQDENAVK KEPMRPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE CLPQLDMSRQ PPTQELVAKD LHGNEWRFRH
201: IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QGNAPSSVIS SHSMHLGVLA TAWHAIQTKT MFTVYYKPRT SPAEFIVPYD
301: HYMESVKNNY SIGMRFKMRF EGEEAPEQRF TGTIVGIEDA DPQRWLESKW RCLKVRWDEN SSIPRPDRVS PWKIEPALSP PALNVPPVAR PKRPRSSILP
401: TSPDSSVLTR EGSSRATADH SQASGFPRVL QGQELSTFRG GFAEINETDL SEKPMIWQTS VNDEKNDIHS ASKRYLPDKW LPLGRPESSL TDLLSGFGSS
501: HGFCLPSADQ AAFGARLVKQ QTQDQEKDFS LLGKPWSLLS SGLSLNLMDS GSKAPGIGGD TPYQMRGDAR YSGYGEFSVL PGHRVANQQG SWIMPQPVSP
601: YMQLSSHSRE MMHKPSVVKQ PEAVKPKEGN YKLFGIPLTS NVCTDAVMMR KSSLIDPASD MNIGIHPHQS LATDSDQRSE QSKGSKVDDG VAANDHDKQF
701: HTFHLAARDK DGKGHSSSTR SCTKVHKQGT ALGRSVDLAK FNNYDELIAE LDQLFDFNGE LKARSKSWLV VYTDDEGDMM LVGDDPWQEF CGMVRKIFIY
801: TKEEVQRMNP GTLNSKGEDT SSVAEGSDAK EVKNLQLPSE SGQAES
101: VLLKAEPDTD EVYAQVTLMP EPNQDENAVK KEPMRPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE CLPQLDMSRQ PPTQELVAKD LHGNEWRFRH
201: IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QGNAPSSVIS SHSMHLGVLA TAWHAIQTKT MFTVYYKPRT SPAEFIVPYD
301: HYMESVKNNY SIGMRFKMRF EGEEAPEQRF TGTIVGIEDA DPQRWLESKW RCLKVRWDEN SSIPRPDRVS PWKIEPALSP PALNVPPVAR PKRPRSSILP
401: TSPDSSVLTR EGSSRATADH SQASGFPRVL QGQELSTFRG GFAEINETDL SEKPMIWQTS VNDEKNDIHS ASKRYLPDKW LPLGRPESSL TDLLSGFGSS
501: HGFCLPSADQ AAFGARLVKQ QTQDQEKDFS LLGKPWSLLS SGLSLNLMDS GSKAPGIGGD TPYQMRGDAR YSGYGEFSVL PGHRVANQQG SWIMPQPVSP
601: YMQLSSHSRE MMHKPSVVKQ PEAVKPKEGN YKLFGIPLTS NVCTDAVMMR KSSLIDPASD MNIGIHPHQS LATDSDQRSE QSKGSKVDDG VAANDHDKQF
701: HTFHLAARDK DGKGHSSSTR SCTKVHKQGT ALGRSVDLAK FNNYDELIAE LDQLFDFNGE LKARSKSWLV VYTDDEGDMM LVGDDPWQEF CGMVRKIFIY
801: TKEEVQRMNP GTLNSKGEDT SSVAEGSDAK EVKNLQLPSE SGQAES
001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
Arabidopsis Description
ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.