Factsheet for Solyc04g081240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096070.2.1
Solyc01g103050.2.1
Solyc03g120380.2.1
Solyc04g054280.1.1
Solyc04g081240.2.1
Solyc05g008850.2.1
Solyc06g053840.2.1
Solyc06g066020.2.1
Solyc08g021820.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19850.1	Solyc09g083290.2.1	AT1G04250.1	21734647
AT1G19850.1	Solyc05g008850.2.1	AT1G15050.1	21734647
AT1G19850.1	Solyc04g081240.2.1	AT1G19850.1	14729917
AT1G19850.1	Solyc04g081240.2.1	AT1G19850.1	21734647
AT1G19850.1	Solyc04g081240.2.1	AT1G19850.1	22096563
AT1G19850.1	Solyc04g081240.2.1	AT1G19850.1	24485461
AT1G19850.1	Solyc03g120380.2.1	AT1G52830.1	14729917
AT1G19850.1	Solyc01g103050.2.1	AT1G59750.1	22096563
AT1G19850.1	Solyc03g120380.2.1	AT3G15540.1	14729917
AT1G19850.1	Solyc03g120380.2.1	AT3G15540.1	22096563
AT1G19850.1	Solyc09g083290.2.1	AT3G23050.1	21734647
AT1G19850.1	Solyc01g096070.2.1	AT3G61830.1	22096563
AT1G19850.1	Solyc04g054280.1.1	AT4G14560.1	14729917
AT1G19850.1	Solyc06g053840.2.1	AT4G14560.1	14729917
AT1G19850.1	Solyc09g083280.2.1	AT4G14560.1	14729917
AT1G19850.1	Solyc04g054280.1.1	AT4G14560.1	22096563
AT1G19850.1	Solyc06g053840.2.1	AT4G14560.1	22096563
AT1G19850.1	Solyc09g083280.2.1	AT4G14560.1	22096563
AT1G19850.1	Solyc04g054280.1.1	AT4G14560.1	9342315
AT1G19850.1	Solyc06g053840.2.1	AT4G14560.1	9342315
AT1G19850.1	Solyc09g083280.2.1	AT4G14560.1	9342315
AT1G19850.1	Solyc06g066020.2.1	AT4G32280.1	21734647
AT1G19850.1	Solyc08g021820.2.1	AT4G32280.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009660	Potato	nucleus	97.42	97.52
Bra025775.1-P	Field mustard	nucleus	40.11	79.36
VIT_18s0001g13930.t01	Wine grape	nucleus	66.99	65.37
Solyc12g006350.1.1	Tomato	nucleus	12.8	63.98
Bra016492.1-P	Field mustard	nucleus	55.91	62.2
CDY62586	Canola	nucleus	56.45	62.06
CDX83741	Canola	nucleus	56.24	61.82
CDY61164	Canola	nucleus	57.1	61.67
AT1G19850.1	Thale cress	nucleus	59.57	61.42
CDY29392	Canola	nucleus	57.85	61.42
CDY39348	Canola	nucleus	57.96	61.32
CDY01393	Canola	nucleus	56.88	61.16
Bra012190.1-P	Field mustard	nucleus	56.99	61.13
KRH05923	Soybean	nucleus	61.18	60.99
KRH17404	Soybean	nucleus	60.86	60.86
GSMUA_Achr1P20040_001	Banana	nucleus	45.05	53.58
Solyc07g043620.2.1	Tomato	nucleus	29.14	51.62
GSMUA_Achr6P36980_001	Banana	nucleus	45.16	48.95
Os04t0664400-01	Rice	nucleus	44.3	44.78
EES13038	Sorghum	nucleus	44.19	43.45
TraesCS2D01G491200.2	Wheat	nucleus	44.19	43.04
TraesCS2B01G519200.2	Wheat	nucleus	44.19	43.04
TraesCS2A01G491000.1	Wheat	nucleus	44.09	42.93
HORVU2Hr1G109650.18	Barley	nucleus	44.09	42.84
Zm00001d001945_P002	Maize	nucleus	43.55	42.72
Zm00001d026540_P002	Maize	nucleus	43.76	42.44
GSMUA_Achr1P20000_001	Banana	nucleus	43.44	41.61
Solyc03g031970.2.1	Tomato	nucleus	37.1	40.88
Solyc02g037530.2.1	Tomato	nucleus	36.99	40.86
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	42.47	37.62
Solyc01g103050.2.1	Tomato	nucleus	25.91	36.85
Solyc07g016180.2.1	Tomato	nucleus	41.4	34.62
Solyc05g047460.2.1	Tomato	nucleus	40.11	34.0
Solyc01g096070.2.1	Tomato	nucleus	24.84	33.53
Solyc07g042260.2.1	Tomato	nucleus	40.65	33.25
Solyc08g082630.2.1	Tomato	nucleus	22.9	33.07
Solyc08g008380.2.1	Tomato	nucleus	23.76	32.36
Solyc03g118290.2.1	Tomato	nucleus	28.17	30.97
Solyc12g042070.1.1	Tomato	nucleus	27.53	30.92
Solyc11g069190.1.1	Tomato	nucleus	25.59	29.35

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733
GO:GO:0009734	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009908	GO:GO:0009942
GO:GO:0009987	GO:GO:0010051	GO:GO:0010305	GO:GO:0016020	GO:GO:0042802	GO:GO:0044212
GO:GO:0048364	GO:GO:0048507	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4BVK3
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF10	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	EnsemblPlantsGene:Solyc04g081240.2
EnsemblPlants:Solyc04g081240.2.1	UniParc:UPI0002765E98	SEG:seg	:	:	:

Description

Auxin response factor 5 [Source:Projected from Arabidopsis thaliana (AT1G19850) UniProtKB/Swiss-Prot;Acc:P93024]

Coordinates

chr4:-:65224973..65230507

Molecular Weight (calculated)

103042.0 Da

IEP (calculated)

5.353

GRAVY (calculated)

-0.436

Length

930 amino acids

Sequence
(BLAST)

001: MGSVEEKNKP GSLVSGAHTL LEEMKLLKEM QDHTGGGRKL ISSELWHACA GPLVTLPQVG SLVYYFPQGH SEQVAVSTNR TATSQIPNYP NLASQLLCQV
101: HNVTLHADKE TDEIYAQMSL QPVNSEKDVF PIPDFGLKPN KHPTEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYSM QPPTQELVVR DLHDNTWTFR
201: HIYRGQPKRH LLTTGWSMFV GAKRLRAGDS VLFIRDEKSQ LLLGVRRANR QQTSLPSSVL SADSMHIGVL AAAAHAAANR STFTIFYNPR ACPSEFVIPL
301: AKYRKSIYNT QLSVGMRFGM MFETEESGKR RYMGTISGIS DLDPLRWPSS KWRCLQVEWD EPGCGDKQNR VSPWEVETPE SLFIFPSLTA GLKRPYQSTF
401: LGAQTEWDSL MQHRPFMRVP ENVYGDLQSS SISNLWSEQL MKMLIRPPPG LTGLQCGVPT VQDIKVALPQ EARNVVQPAG NQKPELITVE ATPAQSETNS
501: EVVLNQPVGV VNSISSQQAT LQAKSKPPEK VETDIIGKNS EPRKETSNSS VKLDQFQCNE DKVAIKPASP HDLPTDASVT ASHHNSFSQL QASPWLIPHN
601: PQIDSAASNN ILQCPTNNEW NMSSLQSAAG LLKYPVSTST LTKHDNSFML PDTIGHGLAP IGQDLWDHQL NDVKCFSQTN LQVPLDITNM QFLPDSYGFK
701: DLSEESHNQS DIYSCLNFDS NSGSTVIDNS VSSTVLDEFC NLKHTDFQNP SDFLLGNISS SQDVQSQITS ASLADSQNFS VQEFADNSGG ASSSNVNFDE
801: CNLLQNSSWQ QVAPRVRTYT KIQKTGSVGR SIDVSGFKNY EELRSEIERM FGLEGLLNDT RGSSWKLVYV DFENDVLLVG DDPWEEFVGC VRCIRILSPT
901: EVQQMGEEGM QLLNSAGLQS INGSTSEFPN

Best Arabidopsis Sequence Match ( AT1G19850.1 )
(BLAST)

001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS

Arabidopsis Description

ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.