Factsheet for Solyc03g120380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g103050.2.1
Solyc02g037530.2.1
Solyc03g031970.2.1
Solyc03g120380.2.1
Solyc03g121060.2.1
Solyc04g054280.1.1
Solyc04g081240.2.1
Solyc05g008850.2.1
Solyc06g053840.2.1
Solyc07g042260.2.1
Solyc08g008380.2.1
Solyc08g082630.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc11g069190.1.1
Solyc12g007230.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52830.1	Solyc09g083290.2.1	AT1G04250.1	21734647
AT1G52830.1	Solyc05g008850.2.1	AT1G15050.1	21734647
AT1G52830.1	Solyc04g081240.2.1	AT1G19850.1	14729917
AT1G52830.1	Solyc04g081240.2.1	AT1G19850.1	22096563
AT1G52830.1	Solyc03g120380.2.1	AT1G52830.1	14729917
AT1G52830.1	Solyc04g054280.1.1	AT4G14560.1	21798944
AT1G52830.1	Solyc06g053840.2.1	AT4G14560.1	21798944
AT1G52830.1	Solyc09g083280.2.1	AT4G14560.1	21798944
AT1G52830.1	Solyc08g008380.2.1	AT4G23980.1	22096563
AT1G52830.1	Solyc08g082630.2.1	AT4G23980.1	22096563
AT1G52830.1	Solyc12g007230.1.1	AT4G29080.1	21798944
AT1G52830.1	Solyc07g042260.2.1	AT5G20730.1	14729917
AT1G52830.1	Solyc02g037530.2.1	AT5G37020.1	14729917
AT1G52830.1	Solyc03g031970.2.1	AT5G37020.1	14729917
AT3G15540.1	Solyc07g042260.2.1	AT1G19220.1	21734647
AT3G15540.1	Solyc04g081240.2.1	AT1G19850.1	14729917
AT3G15540.1	Solyc04g081240.2.1	AT1G19850.1	21734647
AT3G15540.1	Solyc04g081240.2.1	AT1G19850.1	22096563
AT3G15540.1	Solyc03g121060.2.1	AT1G51950.1	21798944
AT3G15540.1	Solyc01g103050.2.1	AT1G59750.1	22096563
AT3G15540.1	Solyc03g120380.2.1	AT3G15540.1	14729917
AT3G15540.1	Solyc03g121060.2.1	AT3G16500.1	21734647
AT3G15540.1	Solyc09g083290.2.1	AT3G23050.1	21798944
AT3G15540.1	Solyc04g054280.1.1	AT4G14560.1	21798944
AT3G15540.1	Solyc06g053840.2.1	AT4G14560.1	21798944
AT3G15540.1	Solyc09g083280.2.1	AT4G14560.1	21798944
AT3G15540.1	Solyc04g054280.1.1	AT4G14560.1	9342315
AT3G15540.1	Solyc06g053840.2.1	AT4G14560.1	9342315
AT3G15540.1	Solyc09g083280.2.1	AT4G14560.1	9342315
AT3G15540.1	Solyc08g008380.2.1	AT4G23980.1	22096563
AT3G15540.1	Solyc08g082630.2.1	AT4G23980.1	22096563
AT3G15540.1	Solyc07g042260.2.1	AT5G20730.1	14729917
AT3G15540.1	Solyc02g037530.2.1	AT5G37020.1	14729917
AT3G15540.1	Solyc03g031970.2.1	AT5G37020.1	14729917
AT3G15540.1	Solyc11g069190.1.1	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006800	Potato	mitochondrion	93.75	92.31
KRH23504	Soybean	nucleus	65.1	66.14
KRH09813	Soybean	nucleus	64.06	65.78
KRH47514	Soybean	nucleus	63.02	64.71
KRH44390	Soybean	nucleus	63.54	62.56
VIT_09s0002g05150.t01	Wine grape	cytosol, nucleus, plastid	61.98	61.98
AT3G15540.1	Thale cress	nucleus	55.21	53.81
CDX82428	Canola	cytosol, nucleus, plastid	54.17	53.61
CDX75834	Canola	cytosol, nucleus, plastid	54.17	53.61
Bra001598.1-P	Field mustard	nucleus	54.17	53.61
CDY20135	Canola	cytosol, nucleus, plastid	54.69	53.3
CDY21845	Canola	cytosol, extracellular, nucleus	54.69	53.3
Bra021117.1-P	Field mustard	cytosol, nucleus, plastid	54.69	53.3
Solyc06g084070.2.1	Tomato	nucleus, plastid	43.23	53.21
CDY68807	Canola	nucleus	53.65	52.55
Solyc04g054280.1.1	Tomato	nucleus	45.31	52.41
Bra027232.1-P	Field mustard	nucleus	52.08	51.55
AT1G52830.1	Thale cress	nucleus	50.52	51.32
Bra018993.1-P	Field mustard	nucleus	54.17	51.23
CDY26042	Canola	nucleus	52.08	51.02
CDY71748	Canola	cytosol, nucleus, plastid	45.31	50.29
Solyc09g065850.2.1	Tomato	nucleus	46.35	48.11
Solyc06g053840.2.1	Tomato	nucleus	46.88	47.37
CDY53800	Canola	nucleus	45.83	46.81
Solyc06g008580.2.1	Tomato	nucleus	44.27	44.74
Solyc09g083280.2.1	Tomato	nucleus	43.23	42.35
Solyc06g008590.2.1	Tomato	nucleus	44.27	40.87
Solyc06g053830.2.1	Tomato	nucleus	46.35	40.83
Solyc09g083290.2.1	Tomato	nucleus	48.96	39.83
Solyc01g097290.2.1	Tomato	nucleus	46.88	35.86
Solyc03g120390.2.1	Tomato	nucleus, plastid	42.19	32.14
Solyc03g120500.2.1	Tomato	nucleus	45.83	31.65
Solyc12g007230.1.1	Tomato	nucleus	45.83	29.83
Solyc04g076850.2.1	Tomato	nucleus	46.35	25.5

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	UniProt:G9HPW6	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
EMBL:JN379445	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF12
SUPFAM:SSF54277	EnsemblPlantsGene:Solyc03g120380.2	EnsemblPlants:Solyc03g120380.2.1	UniParc:UPI000243DBFE	SEG:seg	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:G9HPW6]

Coordinates

chr3:+:68802771..68804561

Molecular Weight (calculated)

21845.0 Da

IEP (calculated)

6.057

GRAVY (calculated)

-0.641

Length

192 amino acids

Sequence
(BLAST)

001: MATELEITEL RLGLPGGILE KNEKKRVYSE ITTSDRNSSS SNNNNNVEAN NYKCQYKNEV VGWPPVCAYR KKNSFNGREA ESNNKMYVKV SMDGAPFLRK
101: VDLSTHKGYD QLVMALEKLF DCYGIGEALE DADKSEFVPI YEDKDGDWML VGDVPWIMFS ESCKRLRIMK RSEAKVIGLG ARDFLKGMSQ EK

Best Arabidopsis Sequence Match ( AT3G15540.1 )
(BLAST)

001: MEKEGLGLEI TELRLGLPGR DVAEKMMKKR AFTEMNMTSS GSNSDQCESG VVSSGGDAEK VNDSPAAKSQ VVGWPPVCSY RKKNSCKEAS TTKVGLGYVK
101: VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFRGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF LESCKRLRIM KRSDATGFGL QPRGVDE

Arabidopsis Description

IAA19Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.