Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g096070.2.1 | nucleus |
| Solyc04g081240.2.1 | nucleus |
| Solyc05g009260.1.1 | nucleus |
| Solyc06g007830.1.1 | nucleus |
| Solyc06g007840.2.1 | nucleus |
| Solyc06g008440.1.1 | nucleus |
| Solyc06g008460.1.1 | nucleus |
| Solyc06g008470.1.1 | nucleus |
| Solyc06g008780.1.1 | nucleus |
| Solyc06g008810.2.1 | nucleus |
| Solyc06g084490.1.1 | nucleus |
| Solyc07g042260.2.1 | nucleus, nucleus |
| Solyc09g074520.2.1 | nucleus |
| Solyc11g069190.1.1 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016356 | Potato | nucleus | 97.42 | 97.42 |
| Bra030219.1-P | Field mustard | nucleus | 51.29 | 67.29 |
| CDY25617 | Canola | nucleus | 51.29 | 67.29 |
| KRH62157 | Soybean | nucleus | 67.62 | 65.56 |
| KRH16912 | Soybean | nucleus | 67.34 | 64.03 |
| CDX89499 | Canola | nucleus | 49.57 | 63.84 |
| KRH72523 | Soybean | nucleus | 66.76 | 63.66 |
| VIT_18s0001g08090.t01 | Wine grape | cytosol, nucleus, vacuole | 74.21 | 63.17 |
| KRH52867 | Soybean | nucleus | 65.62 | 62.91 |
| AT2G22670.4 | Thale cress | nucleus | 56.16 | 57.99 |
| Solyc06g084070.2.1 | Tomato | nucleus, plastid | 25.5 | 57.05 |
| Solyc06g053830.2.1 | Tomato | nucleus | 35.53 | 56.88 |
| Solyc06g008590.2.1 | Tomato | nucleus | 33.81 | 56.73 |
| Solyc09g065850.2.1 | Tomato | nucleus | 29.8 | 56.22 |
| Solyc03g120500.2.1 | Tomato | nucleus | 44.7 | 56.12 |
| Solyc09g083290.2.1 | Tomato | nucleus | 37.54 | 55.51 |
| Solyc04g054280.1.1 | Tomato | nucleus | 25.21 | 53.01 |
| Solyc12g007230.1.1 | Tomato | nucleus | 43.27 | 51.19 |
| Solyc06g053840.2.1 | Tomato | nucleus | 27.79 | 51.05 |
| Solyc01g097290.2.1 | Tomato | nucleus | 36.39 | 50.6 |
| Solyc06g008580.2.1 | Tomato | nucleus | 27.51 | 50.53 |
| Solyc09g083280.2.1 | Tomato | nucleus | 28.08 | 50.0 |
| Solyc03g120380.2.1 | Tomato | nucleus | 25.5 | 46.35 |
| Solyc03g120390.2.1 | Tomato | nucleus, plastid | 31.81 | 44.05 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | UniProt:K4BUC3 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF18 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:Solyc04g076850.2 | EnsemblPlants:Solyc04g076850.2.1 | UniParc:UPI0002766054 | : | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:K4BUC3]
Coordinates
chr4:+:61761281..61765464
Molecular Weight (calculated)
37364.1 Da
IEP (calculated)
7.222
GRAVY (calculated)
-0.481
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPLLGVGE EEGQSNVTLL ASSTSLGSIC IKGSALKERN YMGLSDCSSV DSCNISTSSE DNNGCGLNLK ATELRLGLPG SQSPERGEET CPVSSTKVDE
101: KLLFPLHPSK DTAFSVSQKT VVSGNKRGFS DAMDGFSEGK FLSNSGVKAG DTKETSRVQP PKMKDANTQS TVPERPSAVN DASNRAGSGA PATKAQVVGW
201: PPIRSFRKNT LASASKNNEE VDGKAGSPAL FIKVSMDGAP YLRKVDLRTC SAYQELSSAL EKMFSCFTIG QYGSHGAPGK DMLSESKLKD LLHGSEYVLT
301: YEDKDGDWML VGDVPWEMFI DTCKRLRIMK GSDAIGLAPR AMEKCRSRN
101: KLLFPLHPSK DTAFSVSQKT VVSGNKRGFS DAMDGFSEGK FLSNSGVKAG DTKETSRVQP PKMKDANTQS TVPERPSAVN DASNRAGSGA PATKAQVVGW
201: PPIRSFRKNT LASASKNNEE VDGKAGSPAL FIKVSMDGAP YLRKVDLRTC SAYQELSSAL EKMFSCFTIG QYGSHGAPGK DMLSESKLKD LLHGSEYVLT
301: YEDKDGDWML VGDVPWEMFI DTCKRLRIMK GSDAIGLAPR AMEKCRSRN
001: MSPEEELQSN VSVASSSPTS NCISRNTLGG LKEHNYLGLS DCSSVGSSTL SPLAEDDKAT ISLKATELTL GLPGSQSPAR DTELNLLSPA KLDEKPFFPL
101: LPSKDEICSS SQKNNASGNK RGFSDTMDQF AEAKSSVYTE KNWMFPEAAA TQSVTKKDVP QNIPKGQSST TNNSSSPPAA KAQIVGWPPV RSYRKNTLAT
201: TCKNSDEVDG RPGSGALFVK VSMDGAPYLR KVDLRSYTNY GELSSALEKM FTTFTLGQCG SNGAAGKDML SETKLKDLLN GKDYVLTYED KDGDWMLVGD
301: VPWEMFIDVC KKLKIMKGCD AIGLAPRAME KSKMRA
101: LPSKDEICSS SQKNNASGNK RGFSDTMDQF AEAKSSVYTE KNWMFPEAAA TQSVTKKDVP QNIPKGQSST TNNSSSPPAA KAQIVGWPPV RSYRKNTLAT
201: TCKNSDEVDG RPGSGALFVK VSMDGAPYLR KVDLRSYTNY GELSSALEKM FTTFTLGQCG SNGAAGKDML SETKLKDLLN GKDYVLTYED KDGDWMLVGD
301: VPWEMFIDVC KKLKIMKGCD AIGLAPRAME KSKMRA
Arabidopsis Description
IAA9Auxin-responsive protein IAA9 [Source:UniProtKB/Swiss-Prot;Acc:Q38827]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.