Factsheet for Solyc05g009260.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g112410.1.1
Solyc04g054280.1.1
Solyc04g079970.2.1
Solyc06g053840.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc12g089030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	Solyc09g083290.2.1	AT1G04250.1	11713520
AT3G62980.1	Solyc09g083290.2.1	AT3G23050.1	11713520
AT3G62980.1	Solyc04g054280.1.1	AT4G14560.1	15546359
AT3G62980.1	Solyc06g053840.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc09g083280.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc04g079970.2.1	AT4G36800.1	12682009
AT3G62980.1	Solyc12g089030.1.1	AT4G36800.1	12682009
AT3G62980.1	Solyc03g112410.1.1	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	74.07	52.63
Solyc06g008470.1.1	Tomato	extracellular	37.04	52.63
Solyc06g008440.1.1	Tomato	extracellular	12.35	15.62
PGSC0003DMT400008765	Potato	cytosol	19.75	14.95
Solyc06g008810.2.1	Tomato	cytosol	54.32	10.45
GSMUA_Achr5P26930_001	Banana	cytosol	51.85	9.05
KRG96377	Soybean	cytosol	58.02	8.01
Solyc09g074520.2.1	Tomato	cytosol	56.79	7.92
KRH68108	Soybean	cytosol	56.79	7.85
KRH31921	Soybean	cytosol	55.56	7.69
CDY53998	Canola	cytosol	54.32	7.53
KRH71533	Soybean	cytosol	54.32	7.52
Bra003518.1-P	Field mustard	cytosol	54.32	7.41
AT3G62980.1	Thale cress	cytosol	54.32	7.41
CDY11468	Canola	cytosol	53.09	7.23
Bra007720.1-P	Field mustard	cytosol	53.09	7.23
GSMUA_Achr3P23850_001	Banana	cytosol	51.85	7.22
CDX76680	Canola	cytosol	51.85	7.06
CDX67912	Canola	endoplasmic reticulum, golgi	54.32	6.82
Os05t0150500-00	Rice	plastid	49.38	6.81
Zm00001d010863_P001	Maize	plastid	49.38	6.78
KXG21312	Sorghum	plastid	49.38	6.77
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	46.91	6.45
TraesCS1A01G091300.1	Wheat	cytosol	46.91	6.42
TraesCS1D01G099900.1	Wheat	cytosol	45.68	6.17
CDY68868	Canola	cytosol	40.74	6.11
Solyc06g008780.1.1	Tomato	extracellular	37.04	6.05
HORVU1Hr1G021550.4	Barley	cytosol	46.91	5.92
Solyc04g074980.2.1	Tomato	cytosol	44.44	5.78
Solyc02g079190.2.1	Tomato	cytosol	39.51	5.45
Solyc06g084490.1.1	Tomato	plastid	11.11	4.29
CDX89163	Canola	cytosol	32.1	4.15
Bra014378.1-P	Field mustard	cytosol	32.1	4.15
Solyc05g052620.2.1	Tomato	cytosol	27.16	3.65
VIT_12s0035g00130.t01	Wine grape	cytosol, extracellular, nucleus	2.47	1.36
Solyc06g007840.2.1	Tomato	extracellular, plastid	1.23	1.22
Solyc06g008460.1.1	Tomato	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc05g009260.1.1	EnsemblPlantsGene:Solyc05g009260.1	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR43944
PANTHER:PTHR43944:SF7	UniParc:UPI000276689E	UniProt:K4BXA0	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5:+:3398427..3398672

Molecular Weight (calculated)

8777.8 Da

IEP (calculated)

4.955

GRAVY (calculated)

0.336

Length

81 amino acids

Sequence
(BLAST)

1: MLSLAFLGDK HLCLHYVLSG CDSLGKLEIR DCRPFGDDGA KLEGDNVINC SVCILVAQKL PGLNVEVIDG TPDKKVYLCI L

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.