Factsheet for Solyc06g008460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g112410.1.1
Solyc04g054280.1.1
Solyc04g079970.2.1
Solyc06g053840.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc12g089030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	Solyc09g083290.2.1	AT1G04250.1	11713520
AT3G62980.1	Solyc09g083290.2.1	AT3G23050.1	11713520
AT3G62980.1	Solyc04g054280.1.1	AT4G14560.1	15546359
AT3G62980.1	Solyc06g053840.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc09g083280.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc04g079970.2.1	AT4G36800.1	12682009
AT3G62980.1	Solyc12g089030.1.1	AT4G36800.1	12682009
AT3G62980.1	Solyc03g112410.1.1	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008810.2.1	Tomato	cytosol	87.34	49.17
Solyc06g008780.1.1	Tomato	extracellular	87.76	41.94
Solyc06g007840.2.1	Tomato	extracellular, plastid	13.5	39.02
PGSC0003DMT400056570	Potato	cytosol	90.3	36.03
GSMUA_Achr5P26930_001	Banana	cytosol	59.49	30.39
Solyc09g074520.2.1	Tomato	cytosol	73.0	29.78
CDY68868	Canola	cytosol	67.09	29.44
KRH31921	Soybean	cytosol	70.04	28.38
KRH71533	Soybean	cytosol	69.2	28.03
KRH68108	Soybean	cytosol	69.2	27.99
KRG96377	Soybean	cytosol	68.35	27.6
CDY53998	Canola	cytosol	67.51	27.4
CDX76680	Canola	cytosol	68.35	27.23
AT3G62980.1	Thale cress	cytosol	67.93	27.1
CDY11468	Canola	cytosol	67.93	27.06
Bra007720.1-P	Field mustard	cytosol	67.51	26.89
Bra003518.1-P	Field mustard	cytosol	66.67	26.6
CDX89163	Canola	cytosol	67.09	25.4
Bra014378.1-P	Field mustard	cytosol	67.09	25.4
PGSC0003DMT400053430	Potato	cytosol	28.27	24.91
CDX67912	Canola	endoplasmic reticulum, golgi	66.67	24.5
GSMUA_Achr3P23850_001	Banana	cytosol	59.07	24.05
Solyc06g008440.1.1	Tomato	extracellular	6.33	23.44
Os05t0150500-00	Rice	plastid	57.38	23.17
Zm00001d010863_P001	Maize	plastid	57.38	23.05
KXG21312	Sorghum	plastid	57.38	23.01
TraesCS1A01G091300.1	Wheat	cytosol	56.96	22.8
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	56.12	22.58
TraesCS1D01G099900.1	Wheat	cytosol	56.96	22.5
HORVU1Hr1G021550.4	Barley	cytosol	55.27	20.41
Solyc02g079190.2.1	Tomato	cytosol	48.1	19.42
Solyc04g074980.2.1	Tomato	cytosol	43.88	16.69
Solyc06g084490.1.1	Tomato	plastid	14.35	16.19
Solyc05g052620.2.1	Tomato	cytosol	26.16	10.28
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	0.42	0.71
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0
Solyc05g009260.1.1	Tomato	extracellular	0.0	0.0
Solyc06g008470.1.1	Tomato	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc06g008460.1.1	EnsemblPlantsGene:Solyc06g008460.1	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR43944
PANTHER:PTHR43944:SF7	SUPFAM:SSF52047	UniParc:UPI0002766724	UniProt:K4C3M6	MapMan:35.1	:

Description

No Description!

Coordinates

chr6:+:2369458..2371919

Molecular Weight (calculated)

26852.5 Da

IEP (calculated)

5.084

GRAVY (calculated)

0.194

Length

237 amino acids

Sequence
(BLAST)

001: MQWVLWSIIV NLRELELGES EAEDLSGHWL SHFSDSCTSL VSLNIACLAS EVSFSALERL VARSSHFRTL RLNRAVPIEK LPKLLRHADV SEVFVNVSQA
101: FSGCNQLKGL SGFWDAVPAY FPTIYPVYSK LTSLNLSYAT IQIADLCKLI GNCFNLQRLW VLDYIEDSGL EEIANTCKEL QELRSVLYFC RQMTNDALVT
201: IARNRPNMIR FRLCIIEPQT PDYLILEPLD AGFGVIV

Best Arabidopsis Sequence Match ( AT1G12820.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL

Arabidopsis Description

AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.