CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112	nucleus
CDX73212	nucleus
CDX80590	nucleus
CDX84385
CDX85931	nucleus
CDX87650	nucleus
CDX89042	nucleus
CDX89832
CDX92973
CDY01389	nucleus, nucleus
CDY10068
CDY10349
CDY10694
CDY13521	nucleus
CDY15493
CDY16736
CDY18214
CDY29370	nucleus, nucleus
CDY30781
CDY32537
CDY36883
CDY39073	nucleus
CDY41500
CDY43408	nucleus, nucleus
CDY44209	nucleus, nucleus
CDY48127
CDY53735
CDY63072
CDY63159	nucleus, nucleus
CDY63910
CDY67544	nucleus, nucleus
CDY68971	nucleus, nucleus
CDY69121	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	CDX89832	AT1G04250.1	11713520
AT3G62980.1	CDY10068	AT1G04250.1	11713520
AT3G62980.1	CDY15493	AT1G04250.1	11713520
AT3G62980.1	CDY18214	AT1G04250.1	11713520
AT3G62980.1	CDY32537	AT1G04250.1	11713520
AT3G62980.1	CDY63072	AT1G04250.1	11713520
AT3G62980.1	CDY01389	AT1G20140.1	23226441
AT3G62980.1	CDY29370	AT1G20140.1	23226441
AT3G62980.1	CDY43408	AT1G20140.1	23226441
AT3G62980.1	CDY44209	AT1G20140.1	23226441
AT3G62980.1	CDY63159	AT1G20140.1	23226441
AT3G62980.1	CDY67544	AT1G20140.1	23226441
AT3G62980.1	CDY68971	AT1G20140.1	23226441
AT3G62980.1	CDX68112	AT1G75950.1	10398681
AT3G62980.1	CDX73212	AT1G75950.1	10398681
AT3G62980.1	CDX80590	AT1G75950.1	10398681
AT3G62980.1	CDX85931	AT1G75950.1	10398681
AT3G62980.1	CDX87650	AT1G75950.1	10398681
AT3G62980.1	CDY13521	AT1G75950.1	10398681
AT3G62980.1	CDY39073	AT1G75950.1	10398681
AT3G62980.1	CDX68112	AT1G75950.1	12795696
AT3G62980.1	CDX73212	AT1G75950.1	12795696
AT3G62980.1	CDX80590	AT1G75950.1	12795696
AT3G62980.1	CDX85931	AT1G75950.1	12795696
AT3G62980.1	CDX87650	AT1G75950.1	12795696
AT3G62980.1	CDY13521	AT1G75950.1	12795696
AT3G62980.1	CDY39073	AT1G75950.1	12795696
AT3G62980.1	CDX68112	AT1G75950.1	23226441
AT3G62980.1	CDX73212	AT1G75950.1	23226441
AT3G62980.1	CDX80590	AT1G75950.1	23226441
AT3G62980.1	CDX85931	AT1G75950.1	23226441
AT3G62980.1	CDX87650	AT1G75950.1	23226441
AT3G62980.1	CDY13521	AT1G75950.1	23226441
AT3G62980.1	CDY39073	AT1G75950.1	23226441
AT3G62980.1	CDY01389	AT2G25700.1	23226441
AT3G62980.1	CDY29370	AT2G25700.1	23226441
AT3G62980.1	CDY43408	AT2G25700.1	23226441
AT3G62980.1	CDY44209	AT2G25700.1	23226441
AT3G62980.1	CDY63159	AT2G25700.1	23226441
AT3G62980.1	CDY67544	AT2G25700.1	23226441
AT3G62980.1	CDY68971	AT2G25700.1	23226441
AT3G62980.1	CDX89042	AT3G21850.1	12795696
AT3G62980.1	CDY69121	AT3G21850.1	12795696
AT3G62980.1	CDX89042	AT3G21850.1	23226441
AT3G62980.1	CDY69121	AT3G21850.1	23226441
AT3G62980.1	CDX92973	AT3G23050.1	11713520
AT3G62980.1	CDY10349	AT3G23050.1	11713520
AT3G62980.1	CDY10694	AT3G23050.1	11713520
AT3G62980.1	CDY30781	AT3G23050.1	11713520
AT3G62980.1	CDY63910	AT3G23050.1	11713520
AT3G62980.1	CDY36883	AT4G14560.1	15546359
AT3G62980.1	CDY53735	AT4G14560.1	15546359
AT3G62980.1	CDX84385	AT5G63110.1	12445118
AT3G62980.1	CDY16736	AT5G63110.1	12445118
AT3G62980.1	CDY41500	AT5G63110.1	12445118
AT3G62980.1	CDY48127	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68868	Canola	cytosol	85.79	92.78
AT3G62980.1	Thale cress	cytosol	92.29	90.74
CDY11468	Canola	cytosol	91.95	90.25
CDX76680	Canola	cytosol	91.44	89.75
CDX67912	Canola	endoplasmic reticulum, golgi	98.29	88.99
CDX89163	Canola	cytosol	85.27	79.55
VIT_07s0104g01320.t01	Wine grape	cytosol	77.4	78.47
KRH31921	Soybean	cytosol	78.6	78.46
Solyc06g008440.1.1	Tomato	extracellular	8.56	78.12
KRH71533	Soybean	cytosol	78.25	78.12
Solyc09g074520.2.1	Tomato	cytosol	76.71	77.11
KRH68108	Soybean	cytosol	76.88	76.62
PGSC0003DMT400029517	Potato	cytosol	75.86	76.25
KRG96377	Soybean	cytosol	76.2	75.81
PGSC0003DMT400053430	Potato	cytosol	34.08	73.98
Solyc06g008470.1.1	Tomato	extracellular	7.19	73.68
PGSC0003DMT400093216	Potato	mitochondrion	18.84	71.9
PGSC0003DMT400056570	Potato	cytosol	72.6	71.38
PGSC0003DMT400061752	Potato	plastid	70.55	71.03
Solyc06g008810.2.1	Tomato	cytosol	48.8	67.7
CDY53774	Canola	cytosol	67.81	67.58
Solyc06g008460.1.1	Tomato	extracellular	27.4	67.51
GSMUA_Achr5P26930_001	Banana	cytosol	53.42	67.24
CDX90899	Canola	cytosol	66.95	66.72
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	15.92	66.43
GSMUA_Achr3P23850_001	Banana	cytosol	63.01	63.23
CDY21947	Canola	plastid, vacuole	67.64	63.1
PGSC0003DMT400008765	Potato	cytosol	11.47	62.62
CDY22108	Canola	endoplasmic reticulum, golgi, plastid, vacuole	67.81	61.97
Os05t0150500-00	Rice	plastid	60.45	60.14
CDY28523	Canola	cytosol	58.9	59.83
KXG21312	Sorghum	plastid	60.45	59.73
CDY34211	Canola	cytosol	58.73	59.65
Zm00001d010863_P001	Maize	plastid	60.1	59.49
TraesCS1A01G091300.1	Wheat	cytosol	60.1	59.29
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	59.76	59.25
CDY31282	Canola	cytosol	58.9	58.6
TraesCS1D01G099900.1	Wheat	cytosol	59.93	58.33
CDY21068	Canola	cytosol	58.73	58.14
CDY16034	Canola	cytosol	57.36	57.86
CDX71968	Canola	cytosol	57.02	57.61
CDY26594	Canola	cytosol	56.85	57.44
Solyc06g008780.1.1	Tomato	extracellular	48.46	57.06
Solyc06g007840.2.1	Tomato	extracellular, plastid	7.71	54.88
Solyc05g009260.1.1	Tomato	extracellular	7.53	54.32
HORVU1Hr1G021550.4	Barley	cytosol	59.25	53.89
CDX97301	Canola	cytosol	8.05	51.09
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	9.59	49.12
CDY21439	Canola	cytosol	48.8	47.19
CDX83172	Canola	cytosol, plastid	48.97	47.12
CDY03450	Canola	cytosol	47.6	45.57
CDY34286	Canola	cytosol	47.09	45.16
Solyc06g084490.1.1	Tomato	plastid	13.87	38.57
CDY24941	Canola	cytosol	32.19	31.86
CDY20501	Canola	cytosol	32.02	31.06
CDX74819	Canola	cytosol	31.85	31.0
CDX93223	Canola	cytosol	30.99	30.63
CDY07041	Canola	cytosol	30.65	30.24
CDX93225	Canola	cytosol	30.31	29.8
CDY07040	Canola	cytosol	30.14	29.0
CDY60996	Canola	endoplasmic reticulum, golgi	32.19	26.74

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:A0A078IYC2	EnsemblPlants:CDY53998
ProteinID:CDY53998	ProteinID:CDY53998.1	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00011885001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937
PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0004EDFFB0

Description

BnaC06g43000DBnaC06g43000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYC2]

Coordinates

chrLK033262:-:11872..14519

Molecular Weight (calculated)

65620.7 Da

IEP (calculated)

7.268

GRAVY (calculated)

-0.012

Length

584 amino acids

Sequence
(BLAST)

001: MQKRAGLSFP EEVLEHVFSF IHLDNDRNSV SLVCKSWYEI ERWCRRRVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPEGWG GYVYPWIEAM
101: SKAYTWLEEI RLKRMVVSDE CLELIAKSFK NFKVLVLSSC DGFSTDGLAA IASTCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASDVCF
201: SALERLVSRC PNLKSLKLNR AVPLEKLASL LRRAPQLEEL GTGGYTADVR SDLFNDLYVA LSGCKKLKCL SGLWDAAPAY LPAVYSVCGR LTTLNLSYAT
301: VQSYDLVKLI TLCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSAG CPKLESVLYF CRQMTNDALV TIARNRPNMT
401: RFRLCIIEPK APDHLTLEPL DVGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGKYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: SASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGPPDSRPES CPVERVFIYR TVAGPRFDMP DFVWNMDQQS SMSV

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.