CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80545
CDX80590
CDX85931
CDX87072
CDX87650
CDX88204
CDX90932
CDX92973
CDY10349
CDY10694
CDY13521
CDY18013
CDY19790
CDY21896
CDY22060
CDY30781
CDY39073
CDY63910

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03190.1	CDX68112	AT1G75950.1	12008900
AT4G03190.1	CDX73212	AT1G75950.1	12008900
AT4G03190.1	CDX80590	AT1G75950.1	12008900
AT4G03190.1	CDX85931	AT1G75950.1	12008900
AT4G03190.1	CDX87650	AT1G75950.1	12008900
AT4G03190.1	CDY13521	AT1G75950.1	12008900
AT4G03190.1	CDY39073	AT1G75950.1	12008900
AT4G03190.1	CDX68112	AT1G75950.1	15992545
AT4G03190.1	CDX73212	AT1G75950.1	15992545
AT4G03190.1	CDX80590	AT1G75950.1	15992545
AT4G03190.1	CDX85931	AT1G75950.1	15992545
AT4G03190.1	CDX87650	AT1G75950.1	15992545
AT4G03190.1	CDY13521	AT1G75950.1	15992545
AT4G03190.1	CDY39073	AT1G75950.1	15992545
AT4G03190.1	CDX92973	AT3G23050.1	15992545
AT4G03190.1	CDY10349	AT3G23050.1	15992545
AT4G03190.1	CDY10694	AT3G23050.1	15992545
AT4G03190.1	CDY30781	AT3G23050.1	15992545
AT4G03190.1	CDY63910	AT3G23050.1	15992545
AT4G03190.1	CDX90932	AT4G02570.1	15992545
AT4G03190.1	CDY18013	AT4G02570.1	15992545
AT4G03190.1	CDY21896	AT4G02570.1	15992545
AT4G03190.1	CDY22060	AT4G02570.1	15992545
AT4G03190.1	CDX80545	AT5G25890.1	21734647
AT4G03190.1	CDX87072	AT5G25890.1	21734647
AT4G03190.1	CDX88204	AT5G25890.1	21734647
AT4G03190.1	CDY19790	AT5G25890.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000842.1-P	Field mustard	cytosol	99.15	99.15
CDY53774	Canola	cytosol	96.93	96.93
AT4G03190.1	Thale cress	cytosol, plastid	84.3	84.44
CDY21947	Canola	plastid, vacuole	84.64	79.23
CDY22108	Canola	endoplasmic reticulum, golgi, plastid, vacuole	84.64	77.62
CDY53998	Canola	cytosol	66.72	66.95
CDY11468	Canola	cytosol	67.58	66.55
CDY68868	Canola	cytosol	61.09	66.3
CDX76680	Canola	cytosol	67.24	66.22
GSMUA_Achr5P26930_001	Banana	cytosol	49.15	62.07
CDX97301	Canola	cytosol	9.73	61.96
CDX67912	Canola	endoplasmic reticulum, golgi	66.55	60.47
GSMUA_Achr3P23850_001	Banana	cytosol	59.56	59.97
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	58.36	58.06
TraesCS1A01G091300.1	Wheat	cytosol	58.53	57.94
Os05t0150500-00	Rice	plastid	57.85	57.75
KXG21312	Sorghum	plastid	58.19	57.7
Zm00001d010863_P001	Maize	plastid	57.68	57.29
CDY28523	Canola	cytosol	56.14	57.22
CDY34211	Canola	cytosol	55.97	57.04
TraesCS1D01G099900.1	Wheat	cytosol	58.19	56.83
CDX89163	Canola	cytosol	60.41	56.55
CDX71968	Canola	cytosol	55.12	55.88
CDY16034	Canola	cytosol	54.78	55.44
CDY26594	Canola	cytosol	54.61	55.36
CDY21068	Canola	cytosol	54.95	54.58
CDY31282	Canola	cytosol	54.44	54.34
HORVU1Hr1G021550.4	Barley	cytosol	57.68	52.65
CDY21439	Canola	cytosol	47.27	45.86
CDX83172	Canola	cytosol, plastid	47.27	45.63
CDY03450	Canola	cytosol	46.59	44.75
CDY34286	Canola	cytosol	45.73	44.01
CDY24941	Canola	cytosol	30.2	30.0
CDX93223	Canola	cytosol	29.52	29.27
CDY20501	Canola	cytosol	30.03	29.24
CDX74819	Canola	cytosol	29.86	29.17
CDX93225	Canola	cytosol	29.35	28.96
CDY07041	Canola	cytosol	28.84	28.55
CDY07040	Canola	cytosol	29.01	28.01
CDY60996	Canola	endoplasmic reticulum, golgi	29.86	24.89

Protein Annotations

EnsemblPlants:CDX90899	EnsemblPlantsGene:GSBRNA2T00151629001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	PFAM:PF00646	ProteinID:CDX90899	ProteinID:CDX90899.1	SMART:SM00256
SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0004EE0242	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:

Description

BnaA03g25790D

Coordinates

chrLK031864:+:1192256..1194955

Molecular Weight (calculated)

65701.7 Da

IEP (calculated)

5.360

GRAVY (calculated)

-0.044

Length

586 amino acids

Sequence
(BLAST)

001: MDLRLPSKVL EHILSFVDSN EDRNSVSLVC KSWFETERRT RKRVIVRNCY AVTPEAVARR FPEMRSLTLK GKPHFADYNL VPDGWGGYAW PWIEAMAEKC
101: PSLEELRLKR MVVTDECLEK IAASFKDFKV LVLTSCEGFS TDGLAAIAVA CSNLRELELR ECIVEDLGGD WLSYFPETLT SLVSLDFSCL DSEVKLSDLE
201: RLVSRSPNLK SLKLNRAVSL DALGSLLRLA PQLVELGTGS FSDKLDQEAV SKLSQAFSEM KELKSLSGLW DVLPEYIPLL YSVCPGLTSL NLSYATVQMP
301: NLVELLTRCS NLQKLWVMDL IEDKGLEVVA SSCKELRELR VFPSGAESLN DTNVAMTEQG LVSVSEGCPN LESVLYFCVQ FTNAAMVTIA RNRPNLKCFR
401: LCVMEPFAPD HKTQKPLDEG FKAIVERCKD LQRLSVSGLL TDKAFEYIGT HGKKLRMVSI AFAGDSDFML HHLLSGCESL NKLEIRDCPF GDTALLENAA
501: KLETMRSLWM SSCCVSFGAC KLLSQKMPKL NVEVIDEHPL ETRPDSSPVE RIYIYRTLAG PRLDMPEFVW TIQKNPEIGV SHLAIK

Best Arabidopsis Sequence Match ( AT4G03190.1 )
(BLAST)

001: MGLRFPPKVL EHILSFIDSN EDRNSVSLVC KSWFETERKT RKRVFVGNCY AVSPAAVTRR FPEMRSLTLK GKPHFADYNL VPDGWGGYAW PWIEAMAAKS
101: SSLEEIRMKR MVVTDECLEK IAASFKDFKV LVLTSCEGFS TDGIAAIAAT CRNLRVLELR ECIVEDLGGD WLSYFPESST SLVSLDFSCL DSEVKISDLE
201: RLVSRSPNLK SLKLNPAVTL DGLVSLLRCA PQLTELGTGS FAAQLKPEAF SKLSEAFSNC KQLQSLSGLW DVLPEYLPAL YSVCPGLTSL NLSYATVRMP
301: DLVELLRRCS KLQKLWVMDL IEDKGLEAVA SYCKELRELR VFPSEPDLDA TNIPLTEQGL VFVSKGCRKL ESVLYFCVQF TNAALFTIAR KRPNLKCFRL
401: CVIEPFAPDY KTNEPLDKGF KAIAEGCRDL RRLSVSGLLS DKAFKYIGKH AKKVRMLSIA FAGDSDLMLH HLLSGCESLK KLEIRDCPFG DTALLEHAAK
501: LETMRSLWMS SCFVSFGACK LLSQKMPRLN VEVIDEHPPE SRPESSPVER IYIYRTVAGP RMDTPEFVWT IHKNPENGVS HLAIK

Arabidopsis Description

GRH1GRR1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR12]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.