CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88903
EER90734
EER90896
EER93778
EER98076
EES04173
EES13692
EES13744
EES16315
EES17334
EES17832
KXG22376
KXG33336
OQU84670
OQU86163
OQU91311

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	EER90896	AT1G04250.1	11713520
AT3G62980.1	EES17334	AT1G04250.1	11713520
AT3G62980.1	OQU91311	AT1G04250.1	11713520
AT3G62980.1	EER90896	AT3G23050.1	11713520
AT3G62980.1	EES17334	AT3G23050.1	11713520
AT3G62980.1	OQU91311	AT3G23050.1	11713520
AT3G62980.1	EER90734	AT4G14560.1	15546359
AT3G62980.1	EER93778	AT4G14560.1	15546359
AT3G62980.1	EER98076	AT4G14560.1	15546359
AT3G62980.1	EES16315	AT4G14560.1	15546359
AT3G62980.1	EER88903	AT4G36800.1	12682009
AT3G62980.1	EES13692	AT4G36800.1	12682009
AT3G62980.1	EES13744	AT5G63110.1	12445118
AT4G03190.1	EER90896	AT3G23050.1	15992545
AT4G03190.1	EES17334	AT3G23050.1	15992545
AT4G03190.1	OQU91311	AT3G23050.1	15992545
AT4G03190.1	EES04173	AT4G02570.1	15992545
AT4G03190.1	EES17832	AT5G25890.1	21734647
AT4G03190.1	KXG22376	AT5G25890.1	21734647
AT4G03190.1	KXG33336	AT5G25890.1	21734647
AT4G03190.1	OQU84670	AT5G25890.1	21734647
AT4G03190.1	OQU86163	AT5G25890.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010863_P001	Maize	plastid	95.94	96.1
Os05t0150500-00	Rice	plastid	91.03	91.65
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	86.8	87.1
TraesCS1A01G091300.1	Wheat	cytosol	86.8	86.66
TraesCS1D01G099900.1	Wheat	cytosol	86.97	85.67
HORVU1Hr1G021550.4	Barley	cytosol	85.11	78.35
GSMUA_Achr5P26930_001	Banana	cytosol	57.36	73.06
Solyc06g008470.1.1	Tomato	extracellular	6.94	71.93
GSMUA_Achr3P23850_001	Banana	cytosol	70.73	71.82
PGSC0003DMT400093216	Potato	mitochondrion	16.75	64.71
VIT_07s0104g01320.t01	Wine grape	cytosol	61.25	62.85
Solyc06g008440.1.1	Tomato	extracellular	6.77	62.5
PGSC0003DMT400029517	Potato	cytosol	61.08	62.13
Solyc09g074520.2.1	Tomato	cytosol	61.08	62.13
VIT_14s0030g01240.t01	Wine grape	cytosol	60.74	61.79
KRG96377	Soybean	cytosol	60.91	61.33
KRH31921	Soybean	cytosol	60.41	61.03
CDY68868	Canola	cytosol	55.67	60.93
KRH71533	Soybean	cytosol	60.24	60.85
KRH68108	Soybean	cytosol	60.24	60.75
PGSC0003DMT400053430	Potato	cytosol	27.58	60.59
CDY53998	Canola	cytosol	59.73	60.45
AT4G03190.1	Thale cress	cytosol, plastid	59.22	59.83
AT3G62980.1	Thale cress	cytosol	60.07	59.76
Bra003518.1-P	Field mustard	cytosol	59.73	59.43
PGSC0003DMT400061752	Potato	plastid	58.21	59.31
Bra034191.1-P	Field mustard	cytosol	58.54	59.15
Bra000842.1-P	Field mustard	cytosol	58.21	58.7
CDY53774	Canola	cytosol	58.04	58.53
CDX76680	Canola	cytosol	58.88	58.49
Bra007720.1-P	Field mustard	cytosol	58.71	58.32
CDY11468	Canola	cytosol	58.71	58.32
PGSC0003DMT400056570	Potato	cytosol	58.54	58.25
CDX90899	Canola	cytosol	57.7	58.19
Solyc06g008460.1.1	Tomato	extracellular	23.01	57.38
VIT_12s0035g00130.t01	Wine grape	cytosol, extracellular, nucleus	14.21	57.14
Solyc06g008810.2.1	Tomato	cytosol	39.76	55.82
PGSC0003DMT400008765	Potato	cytosol	9.98	55.14
CDY21947	Canola	plastid, vacuole	58.21	54.95
CDX67912	Canola	endoplasmic reticulum, golgi	59.73	54.73
CDY22108	Canola	endoplasmic reticulum, golgi, plastid, vacuole	58.54	54.15
KXG26136	Sorghum	cytosol	54.31	54.13
EES09791	Sorghum	cytosol	51.61	52.77
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	12.35	52.14
CDX89163	Canola	cytosol	53.64	50.64
Bra014378.1-P	Field mustard	cytosol	53.64	50.64
Solyc05g009260.1.1	Tomato	extracellular	6.77	49.38
Solyc06g008780.1.1	Tomato	extracellular	40.61	48.39
Solyc06g007840.2.1	Tomato	extracellular, plastid	6.43	46.34
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	8.12	42.11
EER92735	Sorghum	cytosol	42.47	41.69
EES05842	Sorghum	plastid	46.7	41.69
Solyc06g084490.1.1	Tomato	plastid	11.34	31.9
EER95129	Sorghum	cytosol	28.93	28.93
EES18318	Sorghum	cytosol	29.1	28.71
EES01769	Sorghum	cytosol	28.6	28.36

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EntrezGene:8069501	UniProt:C5Z046
ProteinID:EES19031.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KXG21312	ProteinID:KXG21312	ProteinID:KXG21312.1
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR43944
PANTHER:PTHR43944:SF7	SMART:SM00367	EnsemblPlantsGene:SORBI_3009G045300	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0001A88C77
RefSeq:XP_002440601.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:4314485..4320455

Molecular Weight (calculated)

64860.4 Da

IEP (calculated)

7.110

GRAVY (calculated)

0.066

Length

591 amino acids

Sequence
(BLAST)

001: MGRGGGSRAA PAATAPPWHV LPDEVWEHAF SFLPADSDRG AAAAACRSWL RAERRSRRRL AVANCYAASP QDAVDRFPAV RAVEVKGKPH FADFGLVPPA
101: WGAAAAPWVA AAADGWPLLE EISFKRMVVT DDCLEMIAAS FRNFQVLRLV SCEGFSTAGL AAIAAGCRNL RELDLQENEI EDCSIHWLSL FPESFTSLVT
201: LNFSCLEGDV NITVLERLVT RCCNLKTLKL NNAIPLDKLA NLLRKAPQIV ELGTGRFSAD YHPDLFSKLE AAFAGCKSLR RLSGAWDAVP EYLPAFYCVC
301: EGLTSLNLSY ATVRGPELIK FISRCKNLQL LWVMDLIEDH GLAVVASSCN KLQELRVFPS APFDAAEQVS LTERGLVDVS ASCPMLESVL YFCRRMTNEA
401: LITIAKNRPN FTCFRLCIIE PHTPDYTTHQ PLDAGFSAIV ESCKGLRRLS VSGLLTDSLF KSIGAHADRL EMLSIAFAGN SDLGLHYILS GCKSLKKLEI
501: RDCPFGDKPL LANAAKLETM RSLWMSTCSL TLGACRQLAR KMPRLSVEVM NDPRRGCPLD SLTDESPVET LYVYRTIAGP RSDTPACVQI V

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.