Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36800.1 | KXG37258 | AT1G05180.1 | 12682009 |
| AT4G36800.1 | KXG21312 | AT3G62980.1 | 12682009 |
| AT4G36800.1 | EES04173 | AT4G02570.1 | 12682009 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G019200.1 | Wheat | cytosol | 83.61 | 83.61 |
| TraesCS6B01G023900.1 | Wheat | cytosol | 83.61 | 83.61 |
| TraesCS6A01G016200.1 | Wheat | cytosol | 83.61 | 83.61 |
| Os09t0321900-01 | Rice | plastid | 82.51 | 82.51 |
| TraesCS5D01G187200.1 | Wheat | cytosol | 81.97 | 81.97 |
| TraesCS5A01G182800.1 | Wheat | cytosol | 81.97 | 81.97 |
| HORVU5Hr1G055840.2 | Barley | cytosol | 81.97 | 81.97 |
| TraesCS5B01G180900.1 | Wheat | cytosol | 81.42 | 81.42 |
| HORVU6Hr1G003170.2 | Barley | mitochondrion | 83.61 | 81.38 |
| EER88903 | Sorghum | cytosol | 80.33 | 80.33 |
| GSMUA_Achr6P08850_001 | Banana | cytosol | 78.69 | 78.69 |
| GSMUA_Achr3P13610_001 | Banana | cytosol | 77.6 | 77.6 |
| Solyc04g079970.2.1 | Tomato | cytosol | 73.22 | 73.22 |
| Bra038542.1-P | Field mustard | cytosol | 73.22 | 72.83 |
| VIT_04s0023g01280.t01 | Wine grape | cytosol | 71.58 | 71.58 |
| Solyc12g089030.1.1 | Tomato | cytosol | 69.95 | 69.95 |
| KRH28611 | Soybean | cytosol | 69.95 | 69.95 |
| KRH76867 | Soybean | cytosol | 69.95 | 69.95 |
| AT4G36800.1 | Thale cress | cytosol | 69.95 | 69.57 |
| PGSC0003DMT400039878 | Potato | cytosol | 69.4 | 69.4 |
| Bra010575.1-P | Field mustard | cytosol | 69.4 | 68.65 |
| AT2G18600.1 | Thale cress | cytosol, nucleus, plastid | 68.85 | 68.11 |
| Bra011708.1-P | Field mustard | cytosol | 68.85 | 68.11 |
| Os08t0374100-01 | Rice | cytosol, nucleus | 86.34 | 68.1 |
| Bra014836.1-P | Field mustard | cytosol | 69.4 | 67.91 |
| Bra017784.1-P | Field mustard | cytosol | 68.31 | 66.84 |
| VIT_03s0063g02110.t01 | Wine grape | golgi | 74.86 | 63.72 |
| Bra036361.1-P | Field mustard | cytosol | 67.21 | 62.12 |
| VIT_18s0001g12010.t01 | Wine grape | cytosol | 63.93 | 59.39 |
| GSMUA_Achr2P23180_001 | Banana | cytosol | 78.14 | 58.13 |
| CDY30311 | Canola | mitochondrion | 73.22 | 57.76 |
| Solyc10g039370.1.1 | Tomato | nucleus, peroxisome, plastid | 25.14 | 57.5 |
| PGSC0003DMT400071582 | Potato | cytosol | 63.93 | 52.7 |
| Solyc02g085690.2.1 | Tomato | extracellular, vacuole | 63.93 | 51.77 |
| CDY51497 | Canola | nucleus | 72.68 | 51.55 |
| Solyc06g007500.1.1 | Tomato | cytosol | 56.83 | 39.69 |
| PGSC0003DMT400032948 | Potato | cytosol | 64.48 | 37.7 |
| PGSC0003DMT400053003 | Potato | cytosol | 34.43 | 34.43 |
Protein Annotations
| MapMan:19.2.2.3.4 | Gene3D:3.10.110.10 | EntrezGene:8069865 | UniProt:C5YK67 | EnsemblPlants:EES13692 | ProteinID:EES13692 |
| ProteinID:EES13692.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0019788 | GO:GO:0045116 |
| InterPro:IPR000608 | InterPro:IPR016135 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43953 |
| PANTHER:PTHR43953:SF1 | MetaCyc:PWY-7511 | SMART:SM00212 | EnsemblPlantsGene:SORBI_3007G105400 | SUPFAM:SSF54495 | unigene:Sbi.4130 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0001A87D8B | RefSeq:XP_002444197.1 | : |
Description
hypothetical protein
Coordinates
chr7:+:37586560..37590151
Molecular Weight (calculated)
20712.9 Da
IEP (calculated)
8.455
GRAVY (calculated)
-0.620
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MINLFKIKGQ KKDDSASTNG KHAAKKQSPG ELRLHKDIAE LNLPKTTKIT FPNGKDDLMN FEATIKPDEG YYMGGKFAFT FQVPPAYPHE PPKVKCKTKV
101: YHPNIDLEGN VCLNILREDW KPVLNINTIV YGLNLLFTQP NDEDPLNHDA AAVLRDDPKK FEKNVRMAIA GGYVDETHFP RCM
101: YHPNIDLEGN VCLNILREDW KPVLNINTIV YGLNLLFTQP NDEDPLNHDA AAVLRDDPKK FEKNVRMAIA GGYVDETHFP RCM
001: MIGLFKVKEK QREESQSNNG RGASTVKKQS AGELRLHKDI SELNLPKSCK ISFPNGKNDL MNFEVTIKPD EGYYLSGNFV FSFQVSNMYP HEAPKVKCKT
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM
Arabidopsis Description
RCE2Probable NEDD8-conjugating enzyme Ubc12-like [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU75]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.