Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038542.1-P | Field mustard | cytosol | 78.92 | 79.35 |
| AT4G36800.1 | Thale cress | cytosol | 76.76 | 77.17 |
| KRH76867 | Soybean | cytosol | 76.22 | 77.05 |
| KRH28611 | Soybean | cytosol | 76.22 | 77.05 |
| VIT_04s0023g01280.t01 | Wine grape | cytosol | 75.14 | 75.96 |
| Solyc04g079970.2.1 | Tomato | cytosol | 74.59 | 75.41 |
| PGSC0003DMT400039878 | Potato | cytosol | 74.59 | 75.41 |
| Solyc12g089030.1.1 | Tomato | cytosol | 73.51 | 74.32 |
| Os10t0190000-02 | Rice | cytosol, nucleus | 72.97 | 73.37 |
| GSMUA_Achr6P08850_001 | Banana | cytosol | 71.89 | 72.68 |
| EER88903 | Sorghum | cytosol | 71.35 | 72.13 |
| HORVU5Hr1G055840.2 | Barley | cytosol | 70.27 | 71.04 |
| TraesCS6D01G019200.1 | Wheat | cytosol | 70.27 | 71.04 |
| TraesCS6B01G023900.1 | Wheat | cytosol | 70.27 | 71.04 |
| TraesCS6A01G016200.1 | Wheat | cytosol | 70.27 | 71.04 |
| GSMUA_Achr3P13610_001 | Banana | cytosol | 69.73 | 70.49 |
| TraesCS5A01G182800.1 | Wheat | cytosol | 69.73 | 70.49 |
| TraesCS5B01G180900.1 | Wheat | cytosol | 69.73 | 70.49 |
| TraesCS5D01G187200.1 | Wheat | cytosol | 69.73 | 70.49 |
| HORVU6Hr1G003170.2 | Barley | mitochondrion | 70.27 | 69.15 |
| EES13692 | Sorghum | cytosol | 68.11 | 68.85 |
| VIT_03s0063g02110.t01 | Wine grape | golgi | 78.38 | 67.44 |
| Zm00001d036481_P001 | Maize | cytosol | 72.43 | 67.34 |
| Os09t0321900-01 | Rice | plastid | 63.24 | 63.93 |
| CDY30311 | Canola | mitochondrion | 78.92 | 62.93 |
| PGSC0003DMT400071582 | Potato | cytosol | 67.57 | 56.31 |
| CDY51497 | Canola | nucleus | 78.38 | 56.2 |
| Os08t0374100-01 | Rice | cytosol, nucleus | 70.27 | 56.03 |
| GSMUA_Achr2P23180_001 | Banana | cytosol | 72.97 | 54.88 |
| Zm00001d014671_P001 | Maize | nucleus | 65.95 | 25.85 |
Protein Annotations
| MapMan:19.2.2.3.4 | Gene3D:3.10.110.10 | EntrezGene:816375 | UniProt:A0A178VNF5 | ProteinID:AAD12207.1 | ProteinID:AEC06784.1 |
| ProteinID:ANM62258.1 | ArrayExpress:AT2G18600 | EnsemblPlantsGene:AT2G18600 | RefSeq:AT2G18600 | TAIR:AT2G18600 | RefSeq:AT2G18600-TAIR-G |
| EnsemblPlants:AT2G18600.1 | TAIR:AT2G18600.1 | Unigene:At.39967 | EMBL:BT003913 | EMBL:BT005005 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016874 | GO:GO:0019538 | GO:GO:0019788 | GO:GO:0045116 | InterPro:IPR000608 |
| InterPro:IPR016135 | RefSeq:NP_001324430.1 | RefSeq:NP_565440.1 | ProteinID:OAP07907.1 | PFAM:PF00179 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43953 |
| PANTHER:PTHR43953:SF4 | UniProt:Q9ZU75 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI000000C1DB | : | : | : | : |
Description
RCE2Probable NEDD8-conjugating enzyme Ubc12-like [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU75]
Coordinates
chr2:-:8073167..8075009
Molecular Weight (calculated)
21134.3 Da
IEP (calculated)
8.599
GRAVY (calculated)
-0.567
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGLFKVKEK QREESQSNNG RGASTVKKQS AGELRLHKDI SELNLPKSCK ISFPNGKNDL MNFEVTIKPD EGYYLSGNFV FSFQVSNMYP HEAPKVKCKT
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.