Factsheet for Os10t0190000-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0935300-02
Os03t0820100-01
Os05t0150500-00
Os05t0193900-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36800.1	Os03t0820100-01	AT1G05180.1	12682009
AT4G36800.1	Os05t0150500-00	AT3G62980.1	12682009
AT4G36800.1	Os01t0935300-02	AT4G02570.1	12682009
AT4G36800.1	Os05t0193900-00	AT4G02570.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88903	Sorghum	cytosol	92.39	92.9
GSMUA_Achr6P08850_001	Banana	cytosol	85.33	85.79
Zm00001d036481_P001	Maize	cytosol	91.3	84.42
GSMUA_Achr3P13610_001	Banana	cytosol	82.61	83.06
VIT_04s0023g01280.t01	Wine grape	cytosol	79.35	79.78
AT4G36800.1	Thale cress	cytosol	78.26	78.26
Bra038542.1-P	Field mustard	cytosol	78.26	78.26
KRH28611	Soybean	cytosol	77.17	77.6
KRH76867	Soybean	cytosol	77.17	77.6
Solyc04g079970.2.1	Tomato	cytosol	76.63	77.05
Os09t0321900-01	Rice	plastid	76.63	77.05
Bra010575.1-P	Field mustard	cytosol	77.17	76.76
PGSC0003DMT400039878	Potato	cytosol	76.09	76.5
Bra017784.1-P	Field mustard	cytosol	77.17	75.94
Bra014836.1-P	Field mustard	cytosol	77.17	75.94
Bra011708.1-P	Field mustard	cytosol	76.09	75.68
Solyc12g089030.1.1	Tomato	cytosol	75.0	75.41
AT2G18600.1	Thale cress	cytosol, nucleus, plastid	73.37	72.97
Bra036361.1-P	Field mustard	cytosol	75.0	69.7
VIT_03s0063g02110.t01	Wine grape	golgi	80.43	68.84
Os08t0374100-01	Rice	cytosol, nucleus	83.7	66.38
GSMUA_Achr2P23180_001	Banana	cytosol	87.5	65.45
Solyc10g039370.1.1	Tomato	nucleus, peroxisome, plastid	28.26	65.0
VIT_18s0001g12010.t01	Wine grape	cytosol	67.93	63.45
CDY30311	Canola	mitochondrion	78.26	62.07
CDY51497	Canola	nucleus	77.72	55.43
PGSC0003DMT400071582	Potato	cytosol	65.76	54.5
Solyc02g085690.2.1	Tomato	extracellular, vacuole	66.85	54.42
Solyc06g007500.1.1	Tomato	cytosol	60.87	42.75
PGSC0003DMT400032948	Potato	cytosol	66.85	39.3
PGSC0003DMT400053003	Potato	cytosol	34.78	34.97
Zm00001d014671_P001	Maize	nucleus	76.63	29.87

Protein Annotations

MapMan:19.2.2.3.4	Gene3D:3.10.110.10	UniProt:A0A0P0XT60	ProteinID:BAT10182.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135
EnsemblPlantsGene:Os10g0190000	EnsemblPlants:Os10t0190000-02	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43953
PANTHER:PTHR43953:SF1	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0003939A55	:	:	:	:	:

Description

UBIQUITIN-CONJUGATING ENZYME 4Similar to Ubiquitin-conjugating enzyme E2 M (EC 6.3.2.19) (Ubiquitin-protein ligase M) (Ubiquitin carrier protein M) (Nedd8-conjugating enzyme Ubc12). (Os10t0190000-01);Similar to Ubiquitin carrier protein. (Os10t0190000-02)

Coordinates

chr10:+:6244578..6250065

Molecular Weight (calculated)

20667.9 Da

IEP (calculated)

9.058

GRAVY (calculated)

-0.444

Length

184 amino acids

Sequence
(BLAST)

001: KMLNLIKIKD KKKEQAASAA GKAPVKKQSA GELRLHKDIS ELNLPKSTSI SFPNGKDDLM NFEIIVRPDE GYYLGGTFVF TFQVSPSYPH EPPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLNLLFTQ PNDEDPLNHE AAAVLRDNPK LFEANVKRAM AGGYVGQHYF PRCA

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.