Factsheet for Zm00001d014671_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010863_P001
Zm00001d012969_P008
Zm00001d034640_P003
Zm00001d042193_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36800.1	Zm00001d012969_P008	AT1G05180.1	12682009
AT4G36800.1	Zm00001d034640_P003	AT1G05180.1	12682009
AT4G36800.1	Zm00001d010863_P001	AT3G62980.1	12682009
AT4G36800.1	Zm00001d042193_P001	AT4G02570.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88903	Sorghum	cytosol	31.14	80.33
Os10t0190000-02	Rice	cytosol, nucleus	29.87	76.63
Zm00001d036481_P001	Maize	cytosol	31.36	74.37
GSMUA_Achr6P08850_001	Banana	cytosol	27.33	70.49
GSMUA_Achr3P13610_001	Banana	cytosol	27.12	69.95
PGSC0003DMT400039878	Potato	cytosol	26.69	68.85
Bra038542.1-P	Field mustard	cytosol	26.69	68.48
Solyc04g079970.2.1	Tomato	cytosol	26.48	68.31
AT4G36800.1	Thale cress	cytosol	25.85	66.3
Solyc10g039370.1.1	Tomato	nucleus, peroxisome, plastid	11.23	66.25
VIT_04s0023g01280.t01	Wine grape	cytosol	25.64	66.12
Solyc12g089030.1.1	Tomato	cytosol	25.64	66.12
AT2G18600.1	Thale cress	cytosol, nucleus, plastid	25.85	65.95
KRH28611	Soybean	cytosol	25.42	65.57
KRH76867	Soybean	cytosol	25.42	65.57
Bra010575.1-P	Field mustard	cytosol	25.42	64.86
Bra014836.1-P	Field mustard	cytosol	25.42	64.17
Bra011708.1-P	Field mustard	cytosol	25.0	63.78
Bra017784.1-P	Field mustard	cytosol	25.21	63.64
Bra036361.1-P	Field mustard	cytosol	24.79	59.09
VIT_03s0063g02110.t01	Wine grape	golgi	26.91	59.07
PGSC0003DMT400071582	Potato	cytosol	26.91	57.21
GSMUA_Achr2P23180_001	Banana	cytosol	29.66	56.91
CDY30311	Canola	mitochondrion	26.91	54.74
VIT_18s0001g12010.t01	Wine grape	cytosol	22.67	54.31
CDY51497	Canola	nucleus	26.91	49.22
Solyc02g085690.2.1	Tomato	extracellular, vacuole	23.31	48.67
Solyc06g007500.1.1	Tomato	cytosol	21.82	39.31
PGSC0003DMT400032948	Potato	cytosol	22.46	33.87
PGSC0003DMT400053003	Potato	cytosol	12.08	31.15

Protein Annotations

MapMan:19.2.2.3.4	Gene3D:3.10.110.10	UniProt:A0A1D6GV09	ProteinID:AQK66780.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	PFAM:PF13966	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR43953	PANTHER:PTHR43953:SF1	InterPro:RVT-Znf	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000844A94E	EnsemblPlantsGene:Zm00001d014671	EnsemblPlants:Zm00001d014671_P001
EnsemblPlants:Zm00001d014671_T001	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:58561932..58566470

Molecular Weight (calculated)

52945.4 Da

IEP (calculated)

7.511

GRAVY (calculated)

-0.169

Length

472 amino acids

Sequence
(BLAST)

001: MSLPASLGEF LDMEQQLTHA NFFCVGSRRG GGAEVVVAAG VKRLILDGVS RCVHISGRST KNLDLAHRST KSMEHLKGCS ENLWISEVGQ NYPPATDYAP
101: TYTSPFVLFL AKDTRHCFLA DHTGNFQTST LYNLLKGSLG HGDVSTTFIW GNNAPPRAQF FCWLLMQGKI QCKWNLKKKG IVDDDCCEIC NQDSETPSHI
201: IFHCPFARQF WSSIGFSVAD DLGTQDLPNI SRPDRLPGAE FNSFVLLCCW QLWKRRNGVV FRQDHATLAA TLHSCASEAK AWAYRHNRKE AQVLGVVSFH
301: LVALDLHGLH SIVLCFPTFL MMPFNISELN LPKTTSISFP NGKDDLMNFE ITIRPDEGYY MGGAFVFTFQ VSPSYPHDPP KVKCKTKVYH PNIDLEGNVC
401: LNILREDWKP VLNINTVIYG LNLLFTQPND EDPLNHEAAA VLRGNPKMFE ANVKRAMTGG YVGQHYFQRC LA

Best Arabidopsis Sequence Match ( AT2G18600.1 )
(BLAST)

001: MIGLFKVKEK QREESQSNNG RGASTVKKQS AGELRLHKDI SELNLPKSCK ISFPNGKNDL MNFEVTIKPD EGYYLSGNFV FSFQVSNMYP HEAPKVKCKT
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM

Arabidopsis Description

RCE2Probable NEDD8-conjugating enzyme Ubc12-like [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU75]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.