Factsheet for PGSC0003DMT400039878

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008765
PGSC0003DMT400013682
PGSC0003DMT400029517
PGSC0003DMT400053430
PGSC0003DMT400056570
PGSC0003DMT400061752
PGSC0003DMT400063662
PGSC0003DMT400093216

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36800.1	PGSC0003DMT400008765	AT3G62980.1	12682009
AT4G36800.1	PGSC0003DMT400013682	AT3G62980.1	12682009
AT4G36800.1	PGSC0003DMT400029517	AT3G62980.1	12682009
AT4G36800.1	PGSC0003DMT400053430	AT3G62980.1	12682009
AT4G36800.1	PGSC0003DMT400056570	AT3G62980.1	12682009
AT4G36800.1	PGSC0003DMT400061752	AT3G62980.1	12682009
AT4G36800.1	PGSC0003DMT400093216	AT3G62980.1	12682009
AT4G36800.1	PGSC0003DMT400063662	AT4G02570.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g089030.1.1	Tomato	cytosol	95.63	95.63
KRH76867	Soybean	cytosol	87.43	87.43
KRH28611	Soybean	cytosol	87.43	87.43
VIT_04s0023g01280.t01	Wine grape	cytosol	85.79	85.79
AT4G36800.1	Thale cress	cytosol	82.51	82.07
Bra038542.1-P	Field mustard	cytosol	81.42	80.98
Bra010575.1-P	Field mustard	cytosol	81.42	80.54
Bra014836.1-P	Field mustard	cytosol	81.42	79.68
Bra011708.1-P	Field mustard	cytosol	80.33	79.46
EER88903	Sorghum	cytosol	78.69	78.69
Bra017784.1-P	Field mustard	cytosol	80.33	78.61
Os10t0190000-02	Rice	cytosol, nucleus	76.5	76.09
GSMUA_Achr6P08850_001	Banana	cytosol	75.96	75.96
VIT_03s0063g02110.t01	Wine grape	golgi	87.98	74.88
AT2G18600.1	Thale cress	cytosol, nucleus, plastid	75.41	74.59
TraesCS6D01G019200.1	Wheat	cytosol	73.77	73.77
GSMUA_Achr3P13610_001	Banana	cytosol	73.77	73.77
TraesCS6B01G023900.1	Wheat	cytosol	73.77	73.77
TraesCS6A01G016200.1	Wheat	cytosol	73.77	73.77
TraesCS5D01G187200.1	Wheat	cytosol	73.77	73.77
TraesCS5A01G182800.1	Wheat	cytosol	73.77	73.77
Zm00001d036481_P001	Maize	cytosol	79.78	73.37
Bra036361.1-P	Field mustard	cytosol	79.23	73.23
TraesCS5B01G180900.1	Wheat	cytosol	73.22	73.22
HORVU5Hr1G055840.2	Barley	cytosol	73.22	73.22
HORVU6Hr1G003170.2	Barley	mitochondrion	73.77	71.81
EES13692	Sorghum	cytosol	69.4	69.4
Os09t0321900-01	Rice	plastid	67.21	67.21
CDY30311	Canola	mitochondrion	81.42	64.22
PGSC0003DMT400071582	Potato	cytosol	77.6	63.96
Os08t0374100-01	Rice	cytosol, nucleus	73.22	57.76
CDY51497	Canola	nucleus	80.87	57.36
GSMUA_Achr2P23180_001	Banana	cytosol	77.05	57.32
PGSC0003DMT400032948	Potato	cytosol	72.13	42.17
PGSC0003DMT400053003	Potato	cytosol	39.34	39.34
Zm00001d014671_P001	Maize	nucleus	68.85	26.69

Protein Annotations

EntrezGene:102598117	MapMan:19.2.2.3.4	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	UniProt:M1B8X2
PFAM:PF00179	EnsemblPlantsGene:PGSC0003DMG400015423	PGSC:PGSC0003DMG400015423	EnsemblPlants:PGSC0003DMT400039878	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43953	PANTHER:PTHR43953:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000296844D	RefSeq:XP_006342600.1	RefSeq:XP_015162102.1	:	:

Description

Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015423]

Coordinates

chr12:+:56794011..56799321

Molecular Weight (calculated)

20845.0 Da

IEP (calculated)

7.541

GRAVY (calculated)

-0.464

Length

183 amino acids

Sequence
(BLAST)

001: MIKLFKVKEK QRELAENANG KPPIKKQSAG ELRLHKDISE LNLPKTCSIS FPNGKDDLMN FEVTIRPDDG YYMGGTFVFS FSISSIYPHE APKVKCKTKV
101: YHPNIDLEGN VCLNILREDW KPVLNINTVI YGLYHLFTEP NHEDPLNHEA AAVLSDNPSM FESNVRRAMS GGYVGQTYFQ RCM

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.