Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36800.1 | KXG37258 | AT1G05180.1 | 12682009 |
| AT4G36800.1 | KXG21312 | AT3G62980.1 | 12682009 |
| AT4G36800.1 | EES04173 | AT4G02570.1 | 12682009 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os10t0190000-02 | Rice | cytosol, nucleus | 92.9 | 92.39 |
| Zm00001d036481_P001 | Maize | cytosol | 98.36 | 90.45 |
| GSMUA_Achr6P08850_001 | Banana | cytosol | 84.7 | 84.7 |
| GSMUA_Achr3P13610_001 | Banana | cytosol | 81.97 | 81.97 |
| EES13692 | Sorghum | cytosol | 80.33 | 80.33 |
| PGSC0003DMT400039878 | Potato | cytosol | 78.69 | 78.69 |
| VIT_04s0023g01280.t01 | Wine grape | cytosol | 78.14 | 78.14 |
| Solyc04g079970.2.1 | Tomato | cytosol | 78.14 | 78.14 |
| Bra038542.1-P | Field mustard | cytosol | 77.6 | 77.17 |
| KRH76867 | Soybean | cytosol | 76.5 | 76.5 |
| KRH28611 | Soybean | cytosol | 76.5 | 76.5 |
| AT4G36800.1 | Thale cress | cytosol | 76.5 | 76.09 |
| Solyc12g089030.1.1 | Tomato | cytosol | 75.96 | 75.96 |
| Bra010575.1-P | Field mustard | cytosol | 75.96 | 75.14 |
| Bra014836.1-P | Field mustard | cytosol | 75.96 | 74.33 |
| Bra011708.1-P | Field mustard | cytosol | 74.86 | 74.05 |
| Bra017784.1-P | Field mustard | cytosol | 74.86 | 73.26 |
| AT2G18600.1 | Thale cress | cytosol, nucleus, plastid | 72.13 | 71.35 |
| Bra036361.1-P | Field mustard | cytosol | 74.32 | 68.69 |
| VIT_03s0063g02110.t01 | Wine grape | golgi | 80.33 | 68.37 |
| Solyc10g039370.1.1 | Tomato | nucleus, peroxisome, plastid | 28.96 | 66.25 |
| GSMUA_Achr2P23180_001 | Banana | cytosol | 86.89 | 64.63 |
| VIT_18s0001g12010.t01 | Wine grape | cytosol | 67.21 | 62.44 |
| CDY30311 | Canola | mitochondrion | 77.6 | 61.21 |
| PGSC0003DMT400071582 | Potato | cytosol | 67.76 | 55.86 |
| CDY51497 | Canola | nucleus | 77.05 | 54.65 |
| Solyc02g085690.2.1 | Tomato | extracellular, vacuole | 66.12 | 53.54 |
| Solyc06g007500.1.1 | Tomato | cytosol | 61.75 | 43.13 |
| PGSC0003DMT400032948 | Potato | cytosol | 65.57 | 38.34 |
| PGSC0003DMT400053003 | Potato | cytosol | 35.52 | 35.52 |
| Zm00001d014671_P001 | Maize | nucleus | 80.33 | 31.14 |
Protein Annotations
| MapMan:19.2.2.3.4 | Gene3D:3.10.110.10 | EntrezGene:8065565 | UniProt:C5Z8W9 | EnsemblPlants:EER88903 | ProteinID:EER88903 |
| ProteinID:EER88903.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0019788 | GO:GO:0045116 |
| InterPro:IPR000608 | InterPro:IPR016135 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43953 |
| PANTHER:PTHR43953:SF1 | MetaCyc:PWY-7511 | SMART:SM00212 | EnsemblPlantsGene:SORBI_3010G251000 | SUPFAM:SSF54495 | unigene:Sbi.1864 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0001A89144 | RefSeq:XP_002437536.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr10:+:59020575..59027965
Molecular Weight (calculated)
20625.9 Da
IEP (calculated)
8.450
GRAVY (calculated)
-0.427
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MINLFKIKGQ KKEEAASAAG KAPVKKQSAG ELRLHKDISE LNLPKTTSIS FPNGKDDLMN FEIIIRPDEG YYMGGTFVFT FQVSPSYPHD PPKVKCKTKV
101: YHPNIDLEGN VCLNILREDW KPVLNINTVI YGLNLLFTQP NDEDPLNHEA AVVLRDNPKM FEANVKRAMA GGYVGQHYFQ RCA
101: YHPNIDLEGN VCLNILREDW KPVLNINTVI YGLNLLFTQP NDEDPLNHEA AVVLRDNPKM FEANVKRAMA GGYVGQHYFQ RCA
001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI
Arabidopsis Description
RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.