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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • peroxisome 2
  • nucleus 2
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g089030.1.1 Tomato cytosol 82.5 36.07
Solyc04g079970.2.1 Tomato cytosol 77.5 33.88
TraesCS5D01G187200.1 Wheat cytosol 68.75 30.05
TraesCS5A01G182800.1 Wheat cytosol 68.75 30.05
TraesCS5B01G180900.1 Wheat cytosol 67.5 29.51
EER88903 Sorghum cytosol 66.25 28.96
TraesCS6D01G019200.1 Wheat cytosol 66.25 28.96
TraesCS6B01G023900.1 Wheat cytosol 66.25 28.96
HORVU5Hr1G055840.2 Barley cytosol 66.25 28.96
TraesCS6A01G016200.1 Wheat cytosol 66.25 28.96
Os10t0190000-02 Rice cytosol, nucleus 65.0 28.26
HORVU6Hr1G003170.2 Barley mitochondrion 66.25 28.19
GSMUA_Achr6P08850_001 Banana cytosol 62.5 27.32
Zm00001d036481_P001 Maize cytosol 67.5 27.14
GSMUA_Achr3P13610_001 Banana cytosol 61.25 26.78
Os09t0321900-01 Rice plastid 58.75 25.68
EES13692 Sorghum cytosol 57.5 25.14
Os08t0374100-01 Rice cytosol, nucleus 66.25 22.84
GSMUA_Achr2P23180_001 Banana cytosol 65.0 21.14
Solyc02g085690.2.1 Tomato extracellular, vacuole 57.5 20.35
Solyc06g007500.1.1 Tomato cytosol 58.75 17.94
Zm00001d014671_P001 Maize nucleus 66.25 11.23
Protein Annotations
Gene3D:3.10.110.10MapMan:35.1GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016740GO:GO:0019538GO:GO:0019788GO:GO:0045116InterPro:IPR000608InterPro:IPR016135
UniProt:K4CZG1PFAM:PF00179PANTHER:PTHR43953PANTHER:PTHR43953:SF4SUPFAM:SSF54495EnsemblPlantsGene:Solyc10g039370.1
EnsemblPlants:Solyc10g039370.1.1InterPro:UBQ-conjugat_E2InterPro:UBQ-conjugating_enzyme/RWDUniParc:UPI000276AFEB::
Description
No Description!
Coordinates
chr10:+:21456772..21458984
Molecular Weight (calculated)
9001.8 Da
IEP (calculated)
4.964
GRAVY (calculated)
-0.280
Length
80 amino acids
Sequence
(BLAST)
1: MECPLPPPPR YISELNLPET CSISFPNGKD DLMNFEVTIR PDEGYYVGGT FVFSFSISSI YPPEAPKVKC KTKVGTFSRY
Best Arabidopsis Sequence Match ( AT2G18600.2 )
(BLAST)
001: MIGLFKVKEK QREESQSNNG RGASTVKKQS AGELRLHKDI SELNLPKSCK ISFPNGKNDL MNFEVTIKPD EGYYLSGNFV FSFQVSNMYP HEAPKVKCKT
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM
Arabidopsis Description
RCE2Probable NEDD8-conjugating enzyme Ubc12-like [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU75]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.