Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0935300-02 | |
| Os03t0820100-01 | |
| Os05t0150500-00 | |
| Os05t0193900-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36800.1 | Os03t0820100-01 | AT1G05180.1 | 12682009 |
| AT4G36800.1 | Os05t0150500-00 | AT3G62980.1 | 12682009 |
| AT4G36800.1 | Os01t0935300-02 | AT4G02570.1 | 12682009 |
| AT4G36800.1 | Os05t0193900-00 | AT4G02570.1 | 12682009 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13692 | Sorghum | cytosol | 68.1 | 86.34 |
| Os09t0321900-01 | Rice | plastid | 66.81 | 84.7 |
| Os10t0190000-02 | Rice | cytosol, nucleus | 66.38 | 83.7 |
| GSMUA_Achr6P08850_001 | Banana | cytosol | 63.36 | 80.33 |
| GSMUA_Achr3P13610_001 | Banana | cytosol | 63.36 | 80.33 |
| Solyc04g079970.2.1 | Tomato | cytosol | 59.48 | 75.41 |
| Solyc12g089030.1.1 | Tomato | cytosol | 59.05 | 74.86 |
| Bra038542.1-P | Field mustard | cytosol | 59.05 | 74.46 |
| VIT_04s0023g01280.t01 | Wine grape | cytosol | 58.62 | 74.32 |
| PGSC0003DMT400039878 | Potato | cytosol | 57.76 | 73.22 |
| KRH76867 | Soybean | cytosol | 57.76 | 73.22 |
| KRH28611 | Soybean | cytosol | 57.76 | 73.22 |
| AT4G36800.1 | Thale cress | cytosol | 56.47 | 71.2 |
| AT2G18600.1 | Thale cress | cytosol, nucleus, plastid | 56.03 | 70.27 |
| Bra010575.1-P | Field mustard | cytosol | 56.03 | 70.27 |
| Bra017784.1-P | Field mustard | cytosol | 56.47 | 70.05 |
| Bra014836.1-P | Field mustard | cytosol | 56.47 | 70.05 |
| Bra011708.1-P | Field mustard | cytosol | 55.6 | 69.73 |
| VIT_03s0063g02110.t01 | Wine grape | golgi | 62.07 | 66.98 |
| Solyc10g039370.1.1 | Tomato | nucleus, peroxisome, plastid | 22.84 | 66.25 |
| Bra036361.1-P | Field mustard | cytosol | 54.74 | 64.14 |
| CDY30311 | Canola | mitochondrion | 62.07 | 62.07 |
| GSMUA_Achr2P23180_001 | Banana | cytosol | 65.52 | 61.79 |
| VIT_18s0001g12010.t01 | Wine grape | cytosol | 50.86 | 59.9 |
| Solyc02g085690.2.1 | Tomato | extracellular, vacuole | 54.31 | 55.75 |
| CDY51497 | Canola | nucleus | 59.91 | 53.88 |
| PGSC0003DMT400071582 | Potato | cytosol | 50.0 | 52.25 |
| Solyc06g007500.1.1 | Tomato | cytosol | 46.98 | 41.6 |
| PGSC0003DMT400032948 | Potato | cytosol | 52.59 | 38.98 |
| PGSC0003DMT400053003 | Potato | cytosol | 28.02 | 35.52 |
Protein Annotations
| MapMan:19.2.2.3.4 | Gene3D:3.10.110.10 | UniProt:A0A0P0XFY8 | ProteinID:BAT05175.1 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016740 | InterPro:IPR000608 | InterPro:IPR016135 |
| EnsemblPlantsGene:Os08g0374100 | EnsemblPlants:Os08t0374100-01 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43953 |
| PANTHER:PTHR43953:SF1 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD |
| UniParc:UPI00039389AE | SEG:seg | : | : | : | : |
Description
UBIQUITIN-CONJUGATING ENZYME 5Similar to Ubiquitin carrier protein. (Os08t0374100-01);Similar to Ubiquitin carrier protein. (Os08t0374100-02)
Coordinates
chr8:-:17513036..17516058
Molecular Weight (calculated)
25503.6 Da
IEP (calculated)
9.362
GRAVY (calculated)
-0.497
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: GLGVKEREIS ILVVSSAACA KTSRGSTGGG AAISIHPASR AGEGRGSWKM LNLIKIKGQK KEDAANANGK PPAKKQSPGE LRLHKDIAEL NLPKSTRISF
101: PNGKDDLMNF EVTIRPDEGY YVGGKFIFTF QVPPAYPHEP PKVKCKTKVY HPNIDLEGNV CLNILREDWK PVLNVNTIVY GLNLLFSQPN DEDPLNHEAA
201: AVLRDNPEKF ERNVQRAMAG GYVGETHFPR CM
101: PNGKDDLMNF EVTIRPDEGY YVGGKFIFTF QVPPAYPHEP PKVKCKTKVY HPNIDLEGNV CLNILREDWK PVLNVNTIVY GLNLLFSQPN DEDPLNHEAA
201: AVLRDNPEKF ERNVQRAMAG GYVGETHFPR CM
001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI
Arabidopsis Description
RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.