Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010575.1-P | Field mustard | cytosol | 85.33 | 84.86 |
| Bra011708.1-P | Field mustard | cytosol | 84.24 | 83.78 |
| Bra014836.1-P | Field mustard | cytosol | 84.24 | 82.89 |
| KRH76867 | Soybean | cytosol | 82.07 | 82.51 |
| KRH28611 | Soybean | cytosol | 82.07 | 82.51 |
| Bra017784.1-P | Field mustard | cytosol | 83.15 | 81.82 |
| PGSC0003DMT400039878 | Potato | cytosol | 80.98 | 81.42 |
| Solyc04g079970.2.1 | Tomato | cytosol | 80.98 | 81.42 |
| VIT_04s0023g01280.t01 | Wine grape | cytosol | 79.89 | 80.33 |
| CDY30311 | Canola | mitochondrion | 100.0 | 79.31 |
| Solyc12g089030.1.1 | Tomato | cytosol | 78.8 | 79.23 |
| AT2G18600.1 | Thale cress | cytosol, nucleus, plastid | 79.35 | 78.92 |
| Os10t0190000-02 | Rice | cytosol, nucleus | 78.26 | 78.26 |
| EER88903 | Sorghum | cytosol | 77.17 | 77.6 |
| GSMUA_Achr6P08850_001 | Banana | cytosol | 75.54 | 75.96 |
| Bra036361.1-P | Field mustard | cytosol | 81.52 | 75.76 |
| GSMUA_Achr3P13610_001 | Banana | cytosol | 75.0 | 75.41 |
| TraesCS6A01G016200.1 | Wheat | cytosol | 75.0 | 75.41 |
| TraesCS6D01G019200.1 | Wheat | cytosol | 75.0 | 75.41 |
| TraesCS6B01G023900.1 | Wheat | cytosol | 75.0 | 75.41 |
| HORVU5Hr1G055840.2 | Barley | cytosol | 73.91 | 74.32 |
| TraesCS5A01G182800.1 | Wheat | cytosol | 73.37 | 73.77 |
| TraesCS5B01G180900.1 | Wheat | cytosol | 73.37 | 73.77 |
| TraesCS5D01G187200.1 | Wheat | cytosol | 73.37 | 73.77 |
| HORVU6Hr1G003170.2 | Barley | mitochondrion | 75.0 | 73.4 |
| EES13692 | Sorghum | cytosol | 72.83 | 73.22 |
| Zm00001d036481_P001 | Maize | cytosol | 77.17 | 71.36 |
| VIT_03s0063g02110.t01 | Wine grape | golgi | 83.15 | 71.16 |
| CDY51497 | Canola | nucleus | 99.46 | 70.93 |
| Os09t0321900-01 | Rice | plastid | 69.57 | 69.95 |
| Os08t0374100-01 | Rice | cytosol, nucleus | 74.46 | 59.05 |
| PGSC0003DMT400071582 | Potato | cytosol | 70.65 | 58.56 |
| GSMUA_Achr2P23180_001 | Banana | cytosol | 77.17 | 57.72 |
| Zm00001d014671_P001 | Maize | nucleus | 68.48 | 26.69 |
Protein Annotations
| MapMan:19.2.2.3.4 | Gene3D:3.10.110.10 | EnsemblPlantsGene:Bra038542 | EnsemblPlants:Bra038542.1 | EnsemblPlants:Bra038542.1-P | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016740 | InterPro:IPR000608 |
| InterPro:IPR016135 | UniProt:M4FBS6 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43953 |
| PANTHER:PTHR43953:SF4 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD |
| UniParc:UPI0002541F62 | SEG:seg | : | : | : | : |
Description
AT4G36800 (E=2e-087) RCE1 | RCE1 (RUB1 CONJUGATING ENZYME 1); NEDD8 ligase/ small conjugating protein ligase
Coordinates
chrA09:-:5190995..5191873
Molecular Weight (calculated)
20810.0 Da
IEP (calculated)
8.874
GRAVY (calculated)
-0.501
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGLFKVKEK QKEEAKNNNA RGASAKKQSA GELRLHKDIT ELNLPKSCSI SFPNGKNDLM NFEVTIKPDD GYYLGGKFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNHEDPLNHD AAAVLRDNPK QFEANVKRAM YGGFVGQTSF PRCI
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNHEDPLNHD AAAVLRDNPK QFEANVKRAM YGGFVGQTSF PRCI
001: MIGLFKVKEK QREESQSNNG RGASTVKKQS AGELRLHKDI SELNLPKSCK ISFPNGKNDL MNFEVTIKPD EGYYLSGNFV FSFQVSNMYP HEAPKVKCKT
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM
Arabidopsis Description
RCE2Probable NEDD8-conjugating enzyme Ubc12-like [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU75]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.