Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P08850_001 | Banana | cytosol | 69.92 | 93.99 |
| GSMUA_Achr3P13610_001 | Banana | cytosol | 69.11 | 92.9 |
| Os10t0190000-02 | Rice | cytosol, nucleus | 65.45 | 87.5 |
| EER88903 | Sorghum | cytosol | 64.63 | 86.89 |
| TraesCS5D01G187200.1 | Wheat | cytosol | 60.98 | 81.97 |
| TraesCS5A01G182800.1 | Wheat | cytosol | 60.98 | 81.97 |
| TraesCS6D01G019200.1 | Wheat | cytosol | 60.57 | 81.42 |
| TraesCS6B01G023900.1 | Wheat | cytosol | 60.57 | 81.42 |
| TraesCS6A01G016200.1 | Wheat | cytosol | 60.57 | 81.42 |
| TraesCS5B01G180900.1 | Wheat | cytosol | 60.57 | 81.42 |
| HORVU5Hr1G055840.2 | Barley | cytosol | 60.57 | 81.42 |
| Zm00001d036481_P001 | Maize | cytosol | 65.45 | 80.9 |
| VIT_04s0023g01280.t01 | Wine grape | cytosol | 59.76 | 80.33 |
| KRH28611 | Soybean | cytosol | 59.76 | 80.33 |
| KRH76867 | Soybean | cytosol | 59.76 | 80.33 |
| AT4G36800.1 | Thale cress | cytosol | 59.76 | 79.89 |
| HORVU6Hr1G003170.2 | Barley | mitochondrion | 60.98 | 79.79 |
| Bra010575.1-P | Field mustard | cytosol | 59.35 | 78.92 |
| EES13692 | Sorghum | cytosol | 58.13 | 78.14 |
| Bra011708.1-P | Field mustard | cytosol | 58.54 | 77.84 |
| Os09t0321900-01 | Rice | plastid | 57.72 | 77.6 |
| Bra014836.1-P | Field mustard | cytosol | 58.94 | 77.54 |
| Bra038542.1-P | Field mustard | cytosol | 57.72 | 77.17 |
| PGSC0003DMT400039878 | Potato | cytosol | 57.32 | 77.05 |
| Solyc04g079970.2.1 | Tomato | cytosol | 57.32 | 77.05 |
| Bra017784.1-P | Field mustard | cytosol | 58.13 | 76.47 |
| Solyc12g089030.1.1 | Tomato | cytosol | 56.5 | 75.96 |
| AT2G18600.1 | Thale cress | cytosol, nucleus, plastid | 54.88 | 72.97 |
| Bra036361.1-P | Field mustard | cytosol | 57.32 | 71.21 |
| VIT_03s0063g02110.t01 | Wine grape | golgi | 61.79 | 70.7 |
| Os08t0374100-01 | Rice | cytosol, nucleus | 61.79 | 65.52 |
| VIT_18s0001g12010.t01 | Wine grape | cytosol | 52.44 | 65.48 |
| Solyc10g039370.1.1 | Tomato | nucleus, peroxisome, plastid | 21.14 | 65.0 |
| CDY30311 | Canola | mitochondrion | 58.94 | 62.5 |
| Solyc02g085690.2.1 | Tomato | extracellular, vacuole | 52.85 | 57.52 |
| CDY51497 | Canola | nucleus | 57.72 | 55.04 |
| PGSC0003DMT400071582 | Potato | cytosol | 49.59 | 54.95 |
| Solyc06g007500.1.1 | Tomato | cytosol | 45.12 | 42.37 |
| PGSC0003DMT400032948 | Potato | cytosol | 52.03 | 40.89 |
| PGSC0003DMT400053003 | Potato | cytosol | 24.8 | 33.33 |
| Zm00001d014671_P001 | Maize | nucleus | 56.91 | 29.66 |
Protein Annotations
| MapMan:19.2.2.3.4 | Gene3D:3.10.110.10 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016740 | EnsemblPlantsGene:GSMUA_Achr2G23180_001 | EnsemblPlants:GSMUA_Achr2P23180_001 | EnsemblPlants:GSMUA_Achr2T23180_001 | InterPro:IPR000608 |
| InterPro:IPR016135 | UniProt:M0SAF9 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43953 |
| PANTHER:PTHR43953:SF4 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD |
| UniParc:UPI000296E1BB | : | : | : | : | : |
Description
NEDD8-conjugating enzyme Ubc12 [Source:GMGC_GENE;Acc:GSMUA_Achr2G23180_001]
Coordinates
chr2:+:21988642..21994603
Molecular Weight (calculated)
27996.9 Da
IEP (calculated)
8.690
GRAVY (calculated)
-0.253
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLRSEIGLY VAKIGDRSAS ATEIRLLWSY IHLHLACHPF SSLLSFPRRC LPEPLVDPSW VRAMIKLFKI KDQKREDAAN SSGRAPVKKQ SAGELRLHKD
101: ISELNLPKST VISFPNGKDD LMNFEISIRP DEGYYQGGTF VFTFQVSPSY PHEPPKVKCK TKVYHPNIDL EGNVCLNILR EDWKPVLNIN TVIYGLILLF
201: MQPNDEDPLN HDAAAVLRDN PRLFETNVRR AMAGGYVGQI YFPRCI
101: ISELNLPKST VISFPNGKDD LMNFEISIRP DEGYYQGGTF VFTFQVSPSY PHEPPKVKCK TKVYHPNIDL EGNVCLNILR EDWKPVLNIN TVIYGLILLF
201: MQPNDEDPLN HDAAAVLRDN PRLFETNVRR AMAGGYVGQI YFPRCI
001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI
Arabidopsis Description
RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.