Factsheet for GSMUA_Achr6P08850_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P23850_001
GSMUA_Achr5P02360_001
GSMUA_Achr5P26930_001
GSMUA_Achr9P17620_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36800.1	GSMUA_Achr5P02360_001	AT1G05180.1	12682009
AT4G36800.1	GSMUA_Achr3P23850_001	AT3G62980.1	12682009
AT4G36800.1	GSMUA_Achr5P26930_001	AT3G62980.1	12682009
AT4G36800.1	GSMUA_Achr9P17620_001	AT4G02570.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P13610_001	Banana	cytosol	89.07	89.07
Os10t0190000-02	Rice	cytosol, nucleus	85.79	85.33
EER88903	Sorghum	cytosol	84.7	84.7
TraesCS6D01G019200.1	Wheat	cytosol	79.78	79.78
TraesCS6B01G023900.1	Wheat	cytosol	79.78	79.78
TraesCS6A01G016200.1	Wheat	cytosol	79.78	79.78
TraesCS5D01G187200.1	Wheat	cytosol	79.78	79.78
TraesCS5A01G182800.1	Wheat	cytosol	79.78	79.78
TraesCS5B01G180900.1	Wheat	cytosol	79.23	79.23
HORVU5Hr1G055840.2	Barley	cytosol	79.23	79.23
VIT_04s0023g01280.t01	Wine grape	cytosol	78.69	78.69
KRH76867	Soybean	cytosol	78.69	78.69
EES13692	Sorghum	cytosol	78.69	78.69
KRH28611	Soybean	cytosol	78.69	78.69
AT4G36800.1	Thale cress	cytosol	78.69	78.26
Zm00001d036481_P001	Maize	cytosol	84.7	77.89
HORVU6Hr1G003170.2	Barley	mitochondrion	79.78	77.66
Bra010575.1-P	Field mustard	cytosol	78.14	77.3
Solyc04g079970.2.1	Tomato	cytosol	77.05	77.05
Bra011708.1-P	Field mustard	cytosol	77.6	76.76
PGSC0003DMT400039878	Potato	cytosol	75.96	75.96
Bra014836.1-P	Field mustard	cytosol	77.6	75.94
Bra038542.1-P	Field mustard	cytosol	75.96	75.54
Bra017784.1-P	Field mustard	cytosol	76.5	74.87
Os09t0321900-01	Rice	plastid	74.86	74.86
Solyc12g089030.1.1	Tomato	cytosol	74.86	74.86
AT2G18600.1	Thale cress	cytosol, nucleus, plastid	72.68	71.89
GSMUA_Achr2P23180_001	Banana	cytosol	93.99	69.92
Bra036361.1-P	Field mustard	cytosol	75.41	69.7
VIT_03s0063g02110.t01	Wine grape	golgi	80.87	68.84
VIT_18s0001g12010.t01	Wine grape	cytosol	69.4	64.47
Os08t0374100-01	Rice	cytosol, nucleus	80.33	63.36
Solyc10g039370.1.1	Tomato	nucleus, peroxisome, plastid	27.32	62.5
CDY30311	Canola	mitochondrion	75.96	59.91
Solyc02g085690.2.1	Tomato	extracellular, vacuole	67.76	54.87
PGSC0003DMT400071582	Potato	cytosol	66.12	54.5
CDY51497	Canola	nucleus	75.41	53.49
Solyc06g007500.1.1	Tomato	cytosol	59.02	41.22
PGSC0003DMT400032948	Potato	cytosol	68.31	39.94
PGSC0003DMT400053003	Potato	cytosol	32.79	32.79
Zm00001d014671_P001	Maize	nucleus	70.49	27.33

Protein Annotations

MapMan:19.2.2.3.4	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr6G08850_001	EnsemblPlants:GSMUA_Achr6P08850_001	EnsemblPlants:GSMUA_Achr6T08850_001	InterPro:IPR000608
InterPro:IPR016135	UniProt:M0T5D4	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43953
PANTHER:PTHR43953:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI000295A0A8	:	:	:	:	:

Description

NEDD8-conjugating enzyme Ubc12 [Source:GMGC_GENE;Acc:GSMUA_Achr6G08850_001]

Coordinates

chr6:-:5858093..5865046

Molecular Weight (calculated)

20767.9 Da

IEP (calculated)

8.081

GRAVY (calculated)

-0.474

Length

183 amino acids

Sequence
(BLAST)

001: MIKLFKIKDQ KREDAANSNG SAPVKKQSAG ELRLHKDISE LNLPKSAIIS FPNGKDDLLN FEISIRPDEG YYQGGTFHFT FHVSPSYPHE PPKVKCKTKV
101: YHPNIDLEGN VCLNILREDW KPVLNINTVI YGLILLFMQP NDEDPLNHDA AAVLRDNPKL FETNVRRAIA GGYVGQNYFP RCM

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.