CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038542.1-P	Field mustard	cytosol	79.31	100.0
KRH76867	Soybean	cytosol	65.09	82.51
KRH28611	Soybean	cytosol	65.09	82.51
Solyc04g079970.2.1	Tomato	cytosol	64.22	81.42
PGSC0003DMT400039878	Potato	cytosol	64.22	81.42
VIT_04s0023g01280.t01	Wine grape	cytosol	63.36	80.33
Solyc12g089030.1.1	Tomato	cytosol	62.5	79.23
AT2G18600.1	Thale cress	cytosol, nucleus, plastid	62.93	78.92
Os10t0190000-02	Rice	cytosol, nucleus	62.07	78.26
CDY51497	Canola	nucleus	86.64	77.91
EER88903	Sorghum	cytosol	61.21	77.6
GSMUA_Achr6P08850_001	Banana	cytosol	59.91	75.96
TraesCS6D01G019200.1	Wheat	cytosol	59.48	75.41
GSMUA_Achr3P13610_001	Banana	cytosol	59.48	75.41
TraesCS6B01G023900.1	Wheat	cytosol	59.48	75.41
TraesCS6A01G016200.1	Wheat	cytosol	59.48	75.41
HORVU5Hr1G055840.2	Barley	cytosol	58.62	74.32
HORVU6Hr1G003170.2	Barley	mitochondrion	59.91	73.94
TraesCS5A01G182800.1	Wheat	cytosol	58.19	73.77
TraesCS5D01G187200.1	Wheat	cytosol	58.19	73.77
TraesCS5B01G180900.1	Wheat	cytosol	58.19	73.77
EES13692	Sorghum	cytosol	57.76	73.22
VIT_03s0063g02110.t01	Wine grape	golgi	66.81	72.09
Zm00001d036481_P001	Maize	cytosol	61.21	71.36
Os09t0321900-01	Rice	plastid	55.17	69.95
Os08t0374100-01	Rice	cytosol, nucleus	62.07	62.07
GSMUA_Achr2P23180_001	Banana	cytosol	62.5	58.94
PGSC0003DMT400071582	Potato	cytosol	56.03	58.56
Zm00001d014671_P001	Maize	nucleus	54.74	26.91

Protein Annotations

MapMan:19.2.2.3.4	Gene3D:3.10.110.10	GO:A0A078GXT0	UniProt:A0A078GXT0	EnsemblPlants:CDY30311	ProteinID:CDY30311
ProteinID:CDY30311.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00044981001	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR43953	PANTHER:PTHR43953:SF4	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143	UniParc:UPI0004EEA0D6	SEG:seg

Description

BnaA09g09660DBnaA09g09660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXT0]

Coordinates

chrLK032252:+:145640..146920

Molecular Weight (calculated)

26418.0 Da

IEP (calculated)

10.122

GRAVY (calculated)

-0.496

Length

232 amino acids

Sequence
(BLAST)

001: MLHIVSKIHR KVLLNQQPRE RKLRSRERGA KIRSELVSSQ ISSMPFAIMI GLFKVKEKQK EEAKNNNARG ASAKKQSAGE LRLHKDITEL NLPKSCSISF
101: PNGKNDLMNF EVTIKPDDGY YLGGKFVFTF QVSPVYPHEA PKVKCKTKVY HPNIDLEGNV CLNILREDWK PVLNINTVIY GLFHLFTEPN HEDPLNHDAA
201: AVLRDNPKQF EANVKRAMYG GFVGQTSFPR CI

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.