Factsheet for PGSC0003DMT400061752

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015610
PGSC0003DMT400015655
PGSC0003DMT400034978
PGSC0003DMT400039878
PGSC0003DMT400042074
PGSC0003DMT400046818
PGSC0003DMT400071582

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	PGSC0003DMT400015610	AT1G04250.1	11713520
AT3G62980.1	PGSC0003DMT400015610	AT3G23050.1	11713520
AT3G62980.1	PGSC0003DMT400015655	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400034978	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400042074	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400039878	AT4G36800.1	12682009
AT3G62980.1	PGSC0003DMT400071582	AT4G36800.1	12682009
AT3G62980.1	PGSC0003DMT400046818	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008440.1.1	Tomato	extracellular	8.79	79.69
PGSC0003DMT400029517	Potato	cytosol	78.1	77.97
PGSC0003DMT400053430	Potato	cytosol	35.34	76.21
PGSC0003DMT400093216	Potato	mitochondrion	19.83	75.16
KRH68108	Soybean	cytosol	75.52	74.74
PGSC0003DMT400056570	Potato	cytosol	76.03	74.24
KRG96377	Soybean	cytosol	75.0	74.11
KRH71533	Soybean	cytosol	72.93	72.31
AT3G62980.1	Thale cress	cytosol	73.79	72.05
CDY68868	Canola	cytosol	66.9	71.85
CDY11468	Canola	cytosol	73.45	71.6
KRH31921	Soybean	cytosol	72.07	71.45
Bra007720.1-P	Field mustard	cytosol	73.1	71.26
CDX76680	Canola	cytosol	72.93	71.09
CDY53998	Canola	cytosol	71.03	70.55
Bra003518.1-P	Field mustard	cytosol	71.38	69.7
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	16.38	67.86
GSMUA_Achr5P26930_001	Banana	cytosol	52.59	65.73
CDX67912	Canola	endoplasmic reticulum, golgi	71.38	64.19
GSMUA_Achr3P23850_001	Banana	cytosol	62.93	62.71
PGSC0003DMT400008765	Potato	cytosol	11.55	62.62
Bra014378.1-P	Field mustard	cytosol	66.21	61.34
CDX89163	Canola	cytosol	66.21	61.34
Os05t0150500-00	Rice	plastid	59.31	58.6
KXG21312	Sorghum	plastid	59.31	58.21
Zm00001d010863_P001	Maize	plastid	58.97	57.97
TraesCS1A01G091300.1	Wheat	cytosol	58.79	57.6
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	58.28	57.39
TraesCS1D01G099900.1	Wheat	cytosol	58.62	56.67
Solyc06g084490.1.1	Tomato	plastid	20.0	55.24
PGSC0003DMT400057711	Potato	cytosol	53.45	52.63
HORVU1Hr1G021550.4	Barley	cytosol	57.24	51.71
PGSC0003DMT400005419	Potato	cytosol	48.62	46.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400061752	EnsemblPlantsGene:PGSC0003DMG400024033	EntrezGene:102578999	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	PGSC:PGSC0003DMG400024033	RefSeq:XP_006352806.1
SEG:seg	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI000296ECE8	UniProt:M1C7Y8	MapMan:11.2.2.1.1
MapMan:19.2.2.8.1.4.6	:	:	:	:	:

Description

Transport inhibitor response 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400024033]

Coordinates

chr6:+:59298298..59301733

Molecular Weight (calculated)

64687.1 Da

IEP (calculated)

5.755

GRAVY (calculated)

0.034

Length

580 amino acids

Sequence
(BLAST)

001: MSSSFPEQVL KHLFSLLTSH KDRNSISLVS KSWYELERRS RRSVFIGNCY AVSPEIMITR FPQLTSIYLK GKPHFADFNL VPDGWGAYLQ PWIAAMSPSY
101: PWLEEIRLKR MVVTDDSLDL ISTSFHHFKV LVLLSCEGFT TDGLAAIAAN CRNLTELDLG ESEVEDLSSD WLSHFPDGCT SLVSLNISCL GSEISLSHLE
201: SLIARSPNLK TLRLSQAVPL EKLPHILSCA SQLVEFGTGA YSSEVQLQSD VFSNLQEAFS GCKILEGLSG FWDVMPAYLP AVYPVCSRLT SLNLSYATIQ
301: NPHLNKLISL CHNLQRLWVL DYIEDTGLQA LAGTCKDLQE LRVFPSNPFD PEPNVSLTEQ GLVAVSDGCP KLQTVLYFCR QMRNAALITI ARNSPNMVCF
401: RLCILEPRTP DYLTLEPLDA GFGAIVEQCK ELRRLSLSGL LTDRVFEYIG THAKKLEMLS VAFAGDSDMG LHHVLSGCES LRKLEIRDCP FSDDALLANA
501: AKLETMRSLW MSSCSVSFGA CKLLSQKMPR LNIEVIDEMG PLDTQPRSCP VDKLYIYRTV AGPRFDLPGF VRIMKEDAAH

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.