Factsheet for Bra014378.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001900.1-P
Bra003735.1-P	nucleus
Bra008231.1-P	nucleus
Bra010575.1-P
Bra011708.1-P
Bra012213.1-P	nucleus, nucleus
Bra012214.1-P	nucleus, nucleus
Bra012216.1-P	nucleus, nucleus
Bra014519.1-P	nucleus
Bra014836.1-P
Bra015298.1-P
Bra015801.1-P	nucleus
Bra017784.1-P
Bra025795.1-P	nucleus, nucleus
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra035858.1-P
Bra036361.1-P
Bra038607.1-P
Bra039732.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	Bra015298.1-P	AT1G04250.1	11713520
AT3G62980.1	Bra030560.1-P	AT1G04250.1	11713520
AT3G62980.1	Bra032520.1-P	AT1G04250.1	11713520
AT3G62980.1	Bra012213.1-P	AT1G20140.1	23226441
AT3G62980.1	Bra012214.1-P	AT1G20140.1	23226441
AT3G62980.1	Bra012216.1-P	AT1G20140.1	23226441
AT3G62980.1	Bra025795.1-P	AT1G20140.1	23226441
AT3G62980.1	Bra003735.1-P	AT1G75950.1	10398681
AT3G62980.1	Bra008231.1-P	AT1G75950.1	10398681
AT3G62980.1	Bra015801.1-P	AT1G75950.1	10398681
AT3G62980.1	Bra003735.1-P	AT1G75950.1	12795696
AT3G62980.1	Bra008231.1-P	AT1G75950.1	12795696
AT3G62980.1	Bra015801.1-P	AT1G75950.1	12795696
AT3G62980.1	Bra003735.1-P	AT1G75950.1	23226441
AT3G62980.1	Bra008231.1-P	AT1G75950.1	23226441
AT3G62980.1	Bra015801.1-P	AT1G75950.1	23226441
AT3G62980.1	Bra012213.1-P	AT2G25700.1	23226441
AT3G62980.1	Bra012214.1-P	AT2G25700.1	23226441
AT3G62980.1	Bra012216.1-P	AT2G25700.1	23226441
AT3G62980.1	Bra025795.1-P	AT2G25700.1	23226441
AT3G62980.1	Bra014519.1-P	AT3G21850.1	12795696
AT3G62980.1	Bra014519.1-P	AT3G21850.1	23226441
AT3G62980.1	Bra001900.1-P	AT3G23050.1	11713520
AT3G62980.1	Bra033886.1-P	AT3G23050.1	11713520
AT3G62980.1	Bra039732.1-P	AT4G14560.1	15546359
AT3G62980.1	Bra010575.1-P	AT4G36800.1	12682009
AT3G62980.1	Bra011708.1-P	AT4G36800.1	12682009
AT3G62980.1	Bra014836.1-P	AT4G36800.1	12682009
AT3G62980.1	Bra017784.1-P	AT4G36800.1	12682009
AT3G62980.1	Bra036361.1-P	AT4G36800.1	12682009
AT3G62980.1	Bra035858.1-P	AT5G63110.1	12445118
AT3G62980.1	Bra038607.1-P	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89163	Canola	cytosol	99.52	99.52
AT3G62980.1	Thale cress	cytosol	80.99	85.35
Bra007720.1-P	Field mustard	cytosol	80.99	85.21
Bra003518.1-P	Field mustard	cytosol	79.87	84.18
Solyc06g008440.1.1	Tomato	extracellular	7.83	76.56
VIT_07s0104g01320.t01	Wine grape	cytosol	67.09	72.92
KRH31921	Soybean	cytosol	67.73	72.48
KRH71533	Soybean	cytosol	67.41	72.14
Solyc09g074520.2.1	Tomato	cytosol	65.81	70.91
KRH68108	Soybean	cytosol	66.29	70.82
PGSC0003DMT400029517	Potato	cytosol	65.5	70.57
KRG96377	Soybean	cytosol	65.97	70.36
Solyc06g008460.1.1	Tomato	extracellular	25.4	67.09
PGSC0003DMT400056570	Potato	cytosol	63.26	66.67
PGSC0003DMT400061752	Potato	plastid	61.34	66.21
Solyc06g008810.2.1	Tomato	cytosol	42.17	62.71
PGSC0003DMT400053430	Potato	cytosol	26.52	61.71
PGSC0003DMT400008765	Potato	cytosol	10.54	61.68
Bra034191.1-P	Field mustard	cytosol	57.35	61.37
Bra000842.1-P	Field mustard	cytosol	56.87	60.75
GSMUA_Achr5P26930_001	Banana	cytosol	43.29	58.41
GSMUA_Achr3P23850_001	Banana	cytosol	53.35	57.39
Solyc06g007840.2.1	Tomato	extracellular, plastid	7.35	56.1
Bra032954.1-P	Field mustard	cytosol	50.0	54.43
Os05t0150500-00	Rice	plastid	50.32	53.66
KXG21312	Sorghum	plastid	50.64	53.64
Zm00001d010863_P001	Maize	plastid	50.32	53.39
Bra026953.1-P	Field mustard	cytosol	48.88	52.94
Bra016754.1-P	Field mustard	cytosol	49.68	52.71
TraesCS1A01G091300.1	Wheat	cytosol	49.52	52.36
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	49.2	52.29
Solyc06g008780.1.1	Tomato	extracellular	41.05	51.81
TraesCS1D01G099900.1	Wheat	cytosol	49.52	51.67
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	11.18	50.0
PGSC0003DMT400093216	Potato	mitochondrion	11.66	47.71
HORVU1Hr1G021550.4	Barley	cytosol	48.4	47.2
Bra000604.1-P	Field mustard	cytosol, plastid	41.21	42.5
Bra013798.1-P	Field mustard	cytosol	39.62	40.86
Solyc06g084490.1.1	Tomato	plastid	12.46	37.14
Solyc05g009260.1.1	Tomato	extracellular	4.15	32.1
Solyc06g008470.1.1	Tomato	extracellular	2.88	31.58
Bra000156.1-P	Field mustard	cytosol	28.11	29.83
Bra005000.1-P	Field mustard	cytosol	27.96	29.02
Bra017044.1-P	Field mustard	cytosol	26.52	27.48
Bra017045.1-P	Field mustard	cytosol	26.04	26.85
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	4.47	24.56

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra014378	EnsemblPlants:Bra014378.1
EnsemblPlants:Bra014378.1-P	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M4DD10	PFAM:PF12937
PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0002545432	:	:	:	:	:

Description

AT3G62980 (E=2e-265) TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding / protein binding / ubiquitin-protein ligase

Coordinates

chrA04:+:229228..232853

Molecular Weight (calculated)

70220.9 Da

IEP (calculated)

7.771

GRAVY (calculated)

-0.046

Length

626 amino acids

Sequence
(BLAST)

001: MYKRVSLSFP EEVLEHVFSF IHLDKDRNSV SLVCKSWYEI ERWCRRKVFV GNCYAVSPGT VIRRFPKLRS VELKGKPHFA DFNLVPEGWG GYVYPWIEAM
101: STSYTWLEEI RLKRMVVSDE CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAASCRNLRE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLSSELSF
201: SALERLVTRC PSLKSLKLNR AVPLEKLAIL LQRAPQLEEF GTGGYTADVR PDVFSDLSVA LSGCKKLKCL SGFWDAAPAY LPAVYSVCCR VTTLNLSYAT
301: VQSYDLVKLL SQCPKLQRLW VLDYIEDTGL EVLASTCKDL RELRVFPSDP FVMEANVALT EQGLVSVSMG CPKLESVLYF CRQMTNDALV TIARNRPNMT
401: RFRLCIIEPK APDHMTLEPL DVGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGESD LGMHHVLSGF GACKLLGQKM PKLNVEVIDE
501: RGPPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQQH STMRVCQGNG YSVKGTAYIS LISGALDPNG YPNGALIYQK NSYSFVTRGN QVANEIAVSM
601: TQVLYWSDLA SKPHRSRSAN SSTLVR

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.