Factsheet for Bra016754.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra001900.1-P
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P
Bra033886.1-P
Bra036257.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	Bra003735.1-P	AT1G75950.1	15992545
AT1G12820.1	Bra008231.1-P	AT1G75950.1	15992545
AT1G12820.1	Bra015801.1-P	AT1G75950.1	15992545
AT1G12820.1	Bra001900.1-P	AT3G23050.1	15992545
AT1G12820.1	Bra033886.1-P	AT3G23050.1	15992545
AT1G12820.1	Bra000874.1-P	AT4G02570.1	15992545
AT1G12820.1	Bra036257.1-P	AT4G02570.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21068	Canola	cytosol	98.81	98.81
CDY31282	Canola	cytosol	95.59	96.08
Bra026953.1-P	Field mustard	cytosol	90.51	92.39
AT1G12820.1	Thale cress	cytosol	86.44	88.39
Bra032954.1-P	Field mustard	cytosol	80.34	82.43
VIT_14s0068g01330.t01	Wine grape	cytosol	72.37	74.65
KRG94665	Soybean	cytosol	71.69	73.95
KRH06858	Soybean	cytosol	71.36	73.6
KRH70053	Soybean	cytosol	69.66	71.73
GSMUA_AchrUn_...	Banana	cytosol	61.69	68.29
GSMUA_Achr9P01140_001	Banana	cytosol	61.69	68.29
GSMUA_Achr6P08000_001	Banana	cytosol	61.19	67.73
KRH08397	Soybean	cytosol	65.08	67.02
GSMUA_Achr6P16510_001	Banana	cytosol	60.34	66.79
GSMUA_Achr10P...	Banana	cytosol	60.17	66.6
Zm00001d003911_P003	Maize	cytosol	63.22	64.87
Os04t0395600-01	Rice	cytosol	63.05	64.7
HORVU2Hr1G070800.1	Barley	cytosol	62.71	64.46
TraesCS2D01G285000.1	Wheat	cytosol	62.54	64.29
TraesCS2A01G286200.1	Wheat	cytosol	62.54	64.29
TraesCS2B01G302900.1	Wheat	cytosol	62.37	64.11
GSMUA_Achr6P20580_001	Banana	cytosol	53.73	63.4
KXG26136	Sorghum	cytosol	63.39	63.07
Zm00001d025268_P001	Maize	cytosol	61.19	63.0
HORVU6Hr1G021040.2	Barley	extracellular	14.75	62.14
EES09791	Sorghum	cytosol	58.31	59.52
Os11t0515500-01	Rice	cytosol	56.95	59.15
TraesCS5A01G281100.1	Wheat	cytosol	56.95	59.05
TraesCS5B01G280100.1	Wheat	cytosol	57.12	58.92
TraesCS5D01G288000.1	Wheat	cytosol	56.78	58.88
HORVU5Hr1G075620.2	Barley	cytosol	56.1	58.27
Bra007720.1-P	Field mustard	cytosol	57.97	57.48
Zm00001d007357_P005	Maize	cytosol	55.59	57.24
Bra003518.1-P	Field mustard	cytosol	57.63	57.24
Bra034191.1-P	Field mustard	cytosol	54.92	55.38
Bra000842.1-P	Field mustard	cytosol	54.92	55.29
Bra014378.1-P	Field mustard	cytosol	52.71	49.68
Bra000604.1-P	Field mustard	cytosol, plastid	49.49	48.11
Bra013798.1-P	Field mustard	cytosol	47.97	46.62
Bra000156.1-P	Field mustard	cytosol	30.17	30.17
Bra005000.1-P	Field mustard	cytosol	30.68	30.02
Bra017044.1-P	Field mustard	cytosol	29.66	28.97
Bra017045.1-P	Field mustard	cytosol	29.15	28.34

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra016754	EnsemblPlants:Bra016754.1
EnsemblPlants:Bra016754.1-P	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	UniProt:M4DJS6	PANTHER:PTHR43944	PANTHER:PTHR43944:SF9	SMART:SM00256
SUPFAM:SSF52047	UniParc:UPI0002546036	SEG:seg	:	:	:

Description

AT1G12820 (E=6e-294) AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); auxin binding / ubiquitin-protein ligase

Coordinates

chrA08:+:19816574..19818832

Molecular Weight (calculated)

66448.4 Da

IEP (calculated)

6.561

GRAVY (calculated)

-0.091

Length

590 amino acids

Sequence
(BLAST)

001: MDRAIKLQLS TSEMNYFPDE VIEHIFDFIP SHRDRNSISL VSKSWHKIER YSRHQVFIGN CYAISPERLI RRFPCLRSLT LKGKPHFADF NLVPHEWGGF
101: LHPWIDALSK ARVGLEELRL KRMVVSDESL ELLSRSFVGF KSLVLVSCDG FTTDGLASIA ANCRHLRELD LQENEIDDHR GQWLNCFPDS STTLVSLNFA
201: CLKGETNLSA LERLVARSPN LKSLKVNRAV PLDALTRLMS CAPQLVDLGV GCYENEAEPE SFEKLMAAIK KCTLLRSLSG FSEVAPVCLT AFYPICENLT
301: SLNLSYAAEI QGNHLIEFVQ FCKRLQLLWI LDSIGDKGLE IVASSCKELQ ELRVFPSDPH DEEDNNTAVT EIGLVAISAG CPKLHSILYF CKQMTNAALI
401: TVAKNCPNFI RFRLCILEPN KPDHITSQSL DEGFGAIVQA CKGLRRLSVS GLLTDKVFLY IGMYAEQLEM LSIAFAGDTD KGMLYVLNGC KKLRKLEIRD
501: SPFGNAALLA DVGKYETMRS LWMSSCEVTL GGCKRLARNA PWLNVEIINE NENGRMERNE EDEREKVDRL YLYRTVVGTR KDAPPCVTIL

Best Arabidopsis Sequence Match ( AT1G12820.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL

Arabidopsis Description

AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.