Factsheet for Zm00001d025268_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013302_P002
Zm00001d033976_P002
Zm00001d041416_P001
Zm00001d042193_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	Zm00001d013302_P002	AT3G23050.1	15992545
AT1G12820.1	Zm00001d033976_P002	AT3G23050.1	15992545
AT1G12820.1	Zm00001d041416_P001	AT3G23050.1	15992545
AT1G12820.1	Zm00001d042193_P001	AT4G02570.1	15992545
AT3G26810.1	Zm00001d013302_P002	AT3G23050.1	15992545
AT3G26810.1	Zm00001d033976_P002	AT3G23050.1	15992545
AT3G26810.1	Zm00001d041416_P001	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003911_P003	Maize	cytosol	91.8	91.48
KXG26136	Sorghum	cytosol	93.19	90.05
Os04t0395600-01	Rice	cytosol	85.34	85.04
TraesCS2D01G285000.1	Wheat	cytosol	84.47	84.32
TraesCS2B01G302900.1	Wheat	cytosol	84.47	84.32
TraesCS2A01G286200.1	Wheat	cytosol	84.47	84.32
HORVU2Hr1G070800.1	Barley	cytosol	84.47	84.32
GSMUA_AchrUn_...	Banana	cytosol	67.02	72.05
GSMUA_Achr9P01140_001	Banana	cytosol	65.97	70.92
GSMUA_Achr6P08000_001	Banana	cytosol	65.62	70.54
GSMUA_Achr6P16510_001	Banana	cytosol	64.75	69.61
GSMUA_Achr10P...	Banana	cytosol	64.4	69.23
VIT_14s0068g01330.t01	Wine grape	cytosol	67.54	67.66
GSMUA_Achr6P20580_001	Banana	cytosol	57.24	65.6
KRG94665	Soybean	cytosol	65.44	65.56
AT3G26810.1	Thale cress	cytosol	65.1	64.87
Bra032954.1-P	Field mustard	cytosol	64.92	64.7
CDY34211	Canola	cytosol	64.75	64.52
KRH06858	Soybean	cytosol	64.4	64.51
CDY28523	Canola	cytosol	64.57	64.35
AT1G12820.1	Thale cress	cytosol	63.53	63.08
KRH70053	Soybean	cytosol	62.13	62.13
CDX71968	Canola	cytosol	62.65	62.11
Bra026953.1-P	Field mustard	cytosol	62.65	62.11
CDY16034	Canola	cytosol	62.65	62.0
CDY26594	Canola	cytosol	62.13	61.59
CDY31282	Canola	cytosol	63.0	61.5
CDY21068	Canola	cytosol	63.18	61.36
Bra016754.1-P	Field mustard	cytosol	63.0	61.19
KRH08397	Soybean	cytosol	58.99	58.99
Zm00001d007357_P005	Maize	cytosol	57.59	57.59
Zm00001d010863_P001	Maize	plastid	55.15	53.56
Zm00001d027975_P001	Maize	cytosol	42.58	40.8
Zm00001d048233_P001	Maize	cytosol	42.23	40.47
Zm00001d018126_P001	Maize	plastid	46.6	40.15
Zm00001d052188_P001	Maize	plastid	46.25	39.79
Zm00001d010082_P001	Maize	cytosol	31.59	30.22
Zm00001d042833_P001	Maize	cytosol	31.24	29.93
Zm00001d038273_P001	Maize	cytosol	31.24	29.88
Zm00001d012338_P001	Maize	cytosol	30.72	29.53
Zm00001d028543_P001	Maize	cytosol	29.14	28.26
Zm00001d047848_P001	Maize	cytosol	28.97	28.09

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100216731	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	ProteinID:AQK43344.1
ProteinID:AQK43345.1	ProteinID:AQK43346.1	ProteinID:AQK43347.1	ProteinID:AQK43350.1	ProteinID:AQK43352.1	UniProt:B4FJG6
EMBL:BT037254	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0000822	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937
PANTHER:PTHR43944	PANTHER:PTHR43944:SF9	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI00017B6FF4	EnsemblPlantsGene:Zm00001d025268	EnsemblPlants:Zm00001d025268_P001	EnsemblPlants:Zm00001d025268_T001	:	:

Description

Protein AUXIN SIGNALING F-BOX 3

Coordinates

chr10:-:111867459..111872204

Molecular Weight (calculated)

64254.1 Da

IEP (calculated)

7.447

GRAVY (calculated)

-0.024

Length

573 amino acids

Sequence
(BLAST)

001: MTYFPGEVVE HIFSFLPSHS DRNTVSLVCK LWYDVERLSR RGVFVGNCYA VLPERVVLRF PNVKALTVKG KPHFADFNLV PPDWGGYAGP WIEATARSCL
101: SLEELRMKRM VISDENLELL ARTFPKFKVL VLISCEGFST DGLAAIANHC KLLRELDLQE NDVEDRGPRW LSFPDSCTSL VSLNFACIKG EVNSGALERL
201: VAKSPNLRSL RLNRSVSVDT LSKILERTPN LEDLGTGNLT DEFQAESFVR LTSALEKCKR LRNLSGFWDA SPIFVPFIYP LCHQLTGLNL SYTPTLDYSD
301: LTKMISRCVK LQRLWVLDCI SDKGLQVVAS SCKDLQELRV FPSEFNVAGA FTVTEEGLVA ISSGCPKLSS LLYFCHQMTN EALTTVAKNC PSFIRFRLCI
401: LEPKKPDAMT GQPLDEGFGA IVRDCKGLRR LSMSGLLTDR VFMYIRMYAK YLEMLSIAFA GDGDKGMMDV MNGCKNLRKL EIRDSPFGDF ALLGNVAKYD
501: TMRSLWMSSC NVTLKGCQVL ASKMPMLNVE IMNELDGSSE MENHGNLSKV DKLYVYRTTA GVRDDAPNFV QIL

Best Arabidopsis Sequence Match ( AT1G12820.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL

Arabidopsis Description

AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.