Factsheet for VIT_14s0068g01330.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	VIT_05s0020g04690.t01	AT3G23050.1	15992545
AT3G26810.1	VIT_05s0020g04690.t01	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06858	Soybean	cytosol	79.72	79.72
KRG94665	Soybean	cytosol	79.72	79.72
AT3G26810.1	Thale cress	cytosol	77.45	77.04
AT1G12820.1	Thale cress	cytosol	76.75	76.08
KRH70053	Soybean	cytosol	75.87	75.74
CDY28523	Canola	cytosol	75.87	75.48
Bra032954.1-P	Field mustard	cytosol	75.7	75.3
CDY34211	Canola	cytosol	75.52	75.13
GSMUA_Achr9P01140_001	Banana	cytosol	69.58	74.67
GSMUA_AchrUn_...	Banana	cytosol	69.58	74.67
Bra026953.1-P	Field mustard	cytosol	74.83	74.05
CDX71968	Canola	cytosol	74.83	74.05
CDY16034	Canola	cytosol	74.65	73.75
CDY26594	Canola	cytosol	74.13	73.36
GSMUA_Achr10P...	Banana	cytosol	68.18	73.17
GSMUA_Achr6P08000_001	Banana	cytosol	68.18	73.17
GSMUA_Achr6P16510_001	Banana	cytosol	68.01	72.98
KRH08397	Soybean	cytosol	73.08	72.95
Bra016754.1-P	Field mustard	cytosol	74.65	72.37
CDY31282	Canola	cytosol	74.13	72.23
CDY21068	Canola	cytosol	74.48	72.2
Os04t0395600-01	Rice	cytosol	69.58	69.22
GSMUA_Achr6P20580_001	Banana	cytosol	60.49	69.2
Zm00001d003911_P003	Maize	cytosol	69.06	68.7
HORVU2Hr1G070800.1	Barley	cytosol	68.71	68.47
TraesCS2A01G286200.1	Wheat	cytosol	68.71	68.47
TraesCS2B01G302900.1	Wheat	cytosol	68.53	68.29
TraesCS2D01G285000.1	Wheat	cytosol	68.53	68.29
KXG26136	Sorghum	cytosol	70.28	67.79
Zm00001d025268_P001	Maize	cytosol	67.66	67.54
HORVU6Hr1G021040.2	Barley	extracellular	15.91	65.0
VIT_07s0104g01320.t01	Wine grape	cytosol	63.46	63.02
VIT_01s0146g00450.t01	Wine grape	cytosol	62.94	62.07
TraesCS5A01G281100.1	Wheat	cytosol	61.71	62.04
Os11t0515500-01	Rice	cytosol	61.36	61.8
TraesCS5B01G280100.1	Wheat	cytosol	61.71	61.71
TraesCS5D01G288000.1	Wheat	cytosol	61.36	61.69
HORVU5Hr1G075620.2	Barley	cytosol	61.01	61.44
VIT_12s0035g00130.t01	Wine grape	cytosol, extracellular, nucleus	15.73	61.22
EES09791	Sorghum	cytosol	61.54	60.9
VIT_14s0030g01240.t01	Wine grape	cytosol	60.84	59.9
Zm00001d007357_P005	Maize	cytosol	58.57	58.46
VIT_00s0181g00040.t01	Wine grape	nucleus	55.24	54.2
VIT_18s0001g07120.t01	Wine grape	cytosol	54.55	52.53
VIT_05s0020g00220.t01	Wine grape	cytosol	18.88	45.38
VIT_05s0020g04830.t01	Wine grape	cytosol	18.18	43.7
VIT_13s0019g03380.t01	Wine grape	cytosol	31.82	30.43

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100263524	wikigene:100263524	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10
ProteinID:CCB46987	ProteinID:CCB46987.1	InterPro:F-box_dom	UniProt:F6H444	EMBL:FN595232	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	EntrezGene:LOC100263524	wikigene:LOC100263524
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF9	SMART:SM00256	SMART:SM00367
SUPFAM:SSF52047	TIGR:TC53427	TIGR:TC58924	TIGR:TC60702	UniParc:UPI00015C86AE	ArrayExpress:VIT_14s0068g01330
EnsemblPlantsGene:VIT_14s0068g01330	EnsemblPlants:VIT_14s0068g01330.t01	unigene:Vvi.6777	RefSeq:XP_002274892	RefSeq:XP_002274892.1	RefSeq:XP_019080656.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:25056097..25060280

Molecular Weight (calculated)

64397.8 Da

IEP (calculated)

7.920

GRAVY (calculated)

0.057

Length

572 amino acids

Sequence
(BLAST)

001: MNYFPDEVLE HVFDFLTSHR DRNTVSLVCK SWFKVEKWSR RRVFVGNCYA ISPERLIARF PRVRALTLKG KPHFADFNLV PPDWGGFVYP WIEAMAKSNI
101: GLEELRLKRM VVSNEGLELL ARSFVNFKSL VLVSCEGFTT DGLAAVAANC RFLRELDLQE NEVEDRKGQW LSCFPDSCTS LVSLNFACLK GEVNLTALER
201: LVARCPNLKS LRLNRAVPLD ALQRILMHAP QLVDLGTGSY VHDPDAETVN KLISTFQKCK SIRSMSGFLE VAPLCLPAIY PICSNLTSLN LSYAPGIHGD
301: ELIKLIRYCR KLQRLWILDC IGDKGLGVVA CTCKELQELR VFPSDPFGVG NAAVTEEGLV AISFGCPKLH SLLYFCQQMT NAALITIAKN CPNFTRFRLC
401: ILDATKADPV TMQPLDEGFG AIVQSCKGLR RLSLSGLLTD QVFLYIGMYA EQLEMLSIAF AGDSDKGMLY VLNGCKKLRK LEIRDCPFGN VALLTDVGKY
501: ETMRSLWMSS CEVTLGGCKV LAEKMPRINV EIINEYDQME FGFDDRQKVD KMFLYRTLVG PRKDAPHFVW TL

Best Arabidopsis Sequence Match ( AT3G26810.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL

Arabidopsis Description

AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.