Factsheet for VIT_18s0001g07120.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24390.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT4G24390.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT4G24390.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT4G24390.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT4G24390.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT4G24390.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT4G24390.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62206	Soybean	cytosol	74.41	75.81
KRH52925	Soybean	cytosol	73.23	74.11
PGSC0003DMT400005419	Potato	cytosol	75.42	73.08
Solyc04g074980.2.1	Tomato	cytosol	75.59	72.07
KRH72427	Soybean	cytosol	75.76	71.43
Bra000604.1-P	Field mustard	cytosol, plastid	72.56	71.0
CDX83172	Canola	cytosol, plastid	72.56	71.0
AT5G49980.1	Thale cress	nucleus	73.57	70.6
CDY21439	Canola	cytosol	71.55	70.36
KRH16819	Soybean	cytosol	75.76	70.31
Bra013798.1-P	Field mustard	cytosol	71.04	69.52
CDY34286	Canola	cytosol	71.21	69.46
CDY03450	Canola	cytosol	71.04	69.18
Os03t0187500-01	Rice	cytosol	29.29	69.05
AT4G24390.1	Thale cress	cytosol, plastid	71.89	68.54
GSMUA_Achr3P06710_001	Banana	cytosol	65.66	68.06
HORVU4Hr1G080360.1	Barley	cytosol, peroxisome, plastid	38.72	67.06
HORVU4Hr1G015730.1	Barley	cytosol, peroxisome, plastid	37.04	65.87
GSMUA_Achr7P11780_001	Banana	cytosol	64.81	65.25
GSMUA_Achr5P05520_001	Banana	cytosol	64.48	65.25
TraesCS7B01G081200.1	Wheat	cytosol	66.16	62.88
TraesCS7A01G176200.1	Wheat	cytosol	65.99	62.82
Os02t0759700-01	Rice	cytosol	67.34	62.79
TraesCS7D01G177500.1	Wheat	cytosol, plastid	66.16	62.48
HORVU6Hr1G077570.1	Barley	mitochondrion	65.49	61.94
TraesCS6A01G315300.1	Wheat	plastid	66.67	61.21
TraesCS6B01G345800.1	Wheat	plastid	66.16	60.93
TraesCS6D01G294600.1	Wheat	plastid	66.33	60.8
EES05842	Sorghum	plastid	67.68	60.73
Zm00001d052188_P001	Maize	plastid	67.68	60.36
Zm00001d018126_P001	Maize	plastid	66.5	59.4
TraesCS4A01G001800.1	Wheat	cytosol	59.6	58.22
TraesCS4D01G301800.1	Wheat	cytosol, nucleus, peroxisome	59.76	58.2
EER92735	Sorghum	cytosol	56.9	56.15
Zm00001d027975_P001	Maize	cytosol	56.4	56.02
Zm00001d048233_P001	Maize	cytosol	55.72	55.35
VIT_14s0068g01330.t01	Wine grape	cytosol	52.53	54.55
VIT_12s0035g00130.t01	Wine grape	cytosol, extracellular, nucleus	12.79	51.7
VIT_07s0104g01320.t01	Wine grape	cytosol	49.66	51.22
HORVU4Hr1G078120.4	Barley	cytosol, plastid	58.59	51.03
VIT_00s0181g00040.t01	Wine grape	nucleus	50.0	50.94
VIT_14s0030g01240.t01	Wine grape	cytosol	49.16	50.26
VIT_01s0146g00450.t01	Wine grape	cytosol	44.11	45.17
VIT_05s0020g00220.t01	Wine grape	cytosol	17.0	42.44
VIT_05s0020g04830.t01	Wine grape	cytosol	16.67	41.6
VIT_13s0019g03380.t01	Wine grape	cytosol	32.83	32.61

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100245501	wikigene:100245501	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10
EMBL:AM440811	ProteinID:CAN80598	ProteinID:CAN80598.1	ProteinID:CCB45626	ProteinID:CCB45626.1	InterPro:F-box-like_dom_sf
UniProt:F6H104	EMBL:FN595227	GO:GO:0000822	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987
InterPro:IPR032675	EntrezGene:LOC100245501	wikigene:LOC100245501	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944
PANTHER:PTHR43944:SF8	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00015C7BAC	ArrayExpress:VIT_18s0001g07120
EnsemblPlantsGene:VIT_18s0001g07120	EnsemblPlants:VIT_18s0001g07120.t01	unigene:Vvi.12588	RefSeq:XP_002283927	RefSeq:XP_002283927.2	SEG:seg

Description

No Description!

Coordinates

chr18:-:5311507..5314031

Molecular Weight (calculated)

67086.3 Da

IEP (calculated)

6.207

GRAVY (calculated)

-0.029

Length

594 amino acids

Sequence
(BLAST)

001: MPEPEVDTRR REIAGVLTGE FQSPSPDQVL ENVLENVLLF LTSRRDRNAV SLVCKSWYRA EALTRSDLFI GNCYAVSPRR AIERFRRVRS VVLKGKPRFA
101: DFNLMPPNWG AYFTPWVTAM ATSYPWLEKV YLKRMFVTDR DLELLAQSFP AFKELVLVCC DGFGTSGLAG IASKCRQLRV LDLIEDEVTD DEVDWISCFP
201: ESGTCLESLI FDCIECPINF EALERLVARS PSLRKLRLNR YVSIGQLYRL MIRAPQLTHL GSGSFSSSDI VAQGDQEPDY ISAFAACKSL VCLSGFREII
301: PDYLPAIYPV CANLTSLNFS YANINTEQLK SVICHCHKLQ IFWVLDSVCD EGLQAVAATC KELRELRVFP IDAREDSEGP VSEVGLQAIS EGCRKLQSIL
401: YFCQRMTNAA VIAMSKNCPD LVVFRLCIMG RHRPDHITGE PMDEGFGAIV MNCKKLTRLA ISGLLTDKAF SYIGKYGKLV RTLSVAFAGD SDMGLKYVLE
501: GCPKLQKLEI RDSPFGDAAL RSGLHHYYNM RFLWMSSCRL SRQGCEEIAR AMPGLVVEVI RNENEEDKDG FEILYMYRSL ERPRIDAPEF VTIL

Best Arabidopsis Sequence Match ( AT5G49980.1 )
(BLAST)

001: MTQDRSEMSE DDDDQQSPPL DLPSTAIADP CSSSSSPNKS RNCISNSQTF PDHVLENVLE NVLQFLDSRC DRNAASLVCK SWWRVEALTR SEVFIGNCYA
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL

Arabidopsis Description

AFB5AFB5 [Source:UniProtKB/TrEMBL;Acc:A0A178UB83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.