Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G176200.1 | Wheat | cytosol | 97.92 | 98.08 |
| TraesCS7D01G177500.1 | Wheat | cytosol, plastid | 97.76 | 97.14 |
| TraesCS6B01G345800.1 | Wheat | plastid | 79.36 | 76.9 |
| GSMUA_Achr3P06710_001 | Banana | cytosol | 60.8 | 66.32 |
| VIT_18s0001g07120.t01 | Wine grape | cytosol | 62.88 | 66.16 |
| GSMUA_Achr5P05520_001 | Banana | cytosol | 60.64 | 64.57 |
| KRH62206 | Soybean | cytosol | 59.36 | 63.64 |
| KRH52925 | Soybean | cytosol | 58.72 | 62.52 |
| PGSC0003DMT400005419 | Potato | cytosol | 60.96 | 62.15 |
| Solyc04g074980.2.1 | Tomato | cytosol | 61.28 | 61.48 |
| Bra000604.1-P | Field mustard | cytosol, plastid | 58.08 | 59.8 |
| CDY21439 | Canola | cytosol | 57.6 | 59.6 |
| CDX83172 | Canola | cytosol, plastid | 57.76 | 59.47 |
| KRH72427 | Soybean | cytosol | 59.84 | 59.37 |
| CDY03450 | Canola | cytosol | 57.92 | 59.34 |
| Bra013798.1-P | Field mustard | cytosol | 57.28 | 58.98 |
| AT4G24390.1 | Thale cress | cytosol, plastid | 58.72 | 58.91 |
| AT5G49980.1 | Thale cress | nucleus | 58.08 | 58.64 |
| CDY34286 | Canola | cytosol | 57.12 | 58.62 |
| KRH16819 | Soybean | cytosol | 60.0 | 58.59 |
| TraesCS2B01G302900.1 | Wheat | cytosol | 44.96 | 48.95 |
| TraesCS5B01G280100.1 | Wheat | cytosol | 43.36 | 47.38 |
| TraesCS1B01G119100.1 | Wheat | cytosol, peroxisome, plastid | 42.4 | 44.99 |
| TraesCS3B01G399200.1 | Wheat | cytosol | 30.24 | 31.82 |
| TraesCS1B01G288100.1 | Wheat | cytosol | 29.12 | 30.74 |
| TraesCS4B01G213500.1 | Wheat | cytosol | 28.64 | 30.55 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G081200.1 | EnsemblPlantsGene:TraesCS7B01G081200 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR43944 |
| PANTHER:PTHR43944:SF8 | SEG:seg | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | MapMan:11.2.2.1.1 |
| MapMan:19.2.2.8.1.4.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:91660654..91663860
Molecular Weight (calculated)
68854.6 Da
IEP (calculated)
5.474
GRAVY (calculated)
-0.099
Length
625 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGAAEEADS PPTHMSEDSS PGSSSGGSGG RRTPDLRGGN NGGGPRASSS APPDQVLDNV LESVLEFLTA ARDRNAASLV CRSWYRAEAQ TRRELFIGNC
101: YAVDPRRAVR RFRAVAAVVL KGKPRFADFS LLPDGWGANV KPWLEALGPA YPCLERICLK RMTVTDDDLG LVARSFPQFK ELSLVCCDGF STLGLAVIAE
201: RCRHLRVLDL IEDYVDQEEE AVDWISKFPV SNTSLESLMF DCVAVPFNFE ALEALVARSP SLRRLRVNHH VSLEQLRRLM ARAPQLTHLG TGAFRPEAPQ
301: GGGMSVSELA PSFAASTSIV CLSGFQEVNP EYLPAIYPVC GNLTSLNVSF ASLTAEDLTP VIRQCHKLQT FWVLDTVGDE GLRAVAETCS DLRELRVFPL
401: DATEDSDGSV SDVGLQAISE GCRKLESILY FCQRMTNAAV VAMSNNCPDL VVFRLCIMGR HRPDRITGEP MDDGFGAIVK NCKKLTRLSV SGLLTDKAFA
501: YIGQYGKLIK TLSLAFSGNS DLSLQFLFEG CTRLQKLEVR DSPFSDRGLL CGLDYFYNMR FLWMNSCRLT MRGCREVAQR MPNLVVEVME EQNEDKVETE
601: TVDKLYLYRS LAGPRGDAPL LVKIL
101: YAVDPRRAVR RFRAVAAVVL KGKPRFADFS LLPDGWGANV KPWLEALGPA YPCLERICLK RMTVTDDDLG LVARSFPQFK ELSLVCCDGF STLGLAVIAE
201: RCRHLRVLDL IEDYVDQEEE AVDWISKFPV SNTSLESLMF DCVAVPFNFE ALEALVARSP SLRRLRVNHH VSLEQLRRLM ARAPQLTHLG TGAFRPEAPQ
301: GGGMSVSELA PSFAASTSIV CLSGFQEVNP EYLPAIYPVC GNLTSLNVSF ASLTAEDLTP VIRQCHKLQT FWVLDTVGDE GLRAVAETCS DLRELRVFPL
401: DATEDSDGSV SDVGLQAISE GCRKLESILY FCQRMTNAAV VAMSNNCPDL VVFRLCIMGR HRPDRITGEP MDDGFGAIVK NCKKLTRLSV SGLLTDKAFA
501: YIGQYGKLIK TLSLAFSGNS DLSLQFLFEG CTRLQKLEVR DSPFSDRGLL CGLDYFYNMR FLWMNSCRLT MRGCREVAQR MPNLVVEVME EQNEDKVETE
601: TVDKLYLYRS LAGPRGDAPL LVKIL
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
Arabidopsis Description
AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.