Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G360400.2 | Wheat | cytosol | 98.99 | 98.82 |
| TraesCS3A01G367500.1 | Wheat | cytosol | 92.26 | 98.38 |
| HORVU3Hr1G085210.2 | Barley | cytosol | 96.97 | 96.97 |
| Os01t0853400-01 | Rice | cytosol | 87.88 | 87.73 |
| Zm00001d012338_P001 | Maize | cytosol | 84.51 | 84.23 |
| Zm00001d042833_P001 | Maize | cytosol | 83.67 | 83.11 |
| EES01769 | Sorghum | cytosol | 83.33 | 83.05 |
| TraesCS1B01G288100.1 | Wheat | cytosol | 78.79 | 79.05 |
| GSMUA_Achr6P33630_001 | Banana | cytosol, mitochondrion, nucleus | 67.0 | 68.27 |
| GSMUA_Achr5P28930_001 | Banana | cytosol | 63.8 | 67.68 |
| GSMUA_Achr9P03690_001 | Banana | cytosol | 66.5 | 65.51 |
| TraesCS4B01G213500.1 | Wheat | cytosol | 60.61 | 61.43 |
| VIT_13s0019g03380.t01 | Wine grape | cytosol | 61.11 | 60.7 |
| KRH31107 | Soybean | cytosol | 58.42 | 58.81 |
| KRG97777 | Soybean | cytosol | 58.42 | 58.81 |
| KRH14993 | Soybean | cytosol | 55.22 | 57.75 |
| KRH73146 | Soybean | cytosol | 56.4 | 57.36 |
| Solyc05g052620.2.1 | Tomato | cytosol | 58.08 | 57.21 |
| CDY24941 | Canola | cytosol | 55.89 | 56.27 |
| Bra000156.1-P | Field mustard | cytosol | 55.72 | 56.1 |
| AT2G39940.1 | Thale cress | cytosol | 55.56 | 55.74 |
| GSMUA_Achr8P02350_001 | Banana | cytosol | 15.82 | 54.65 |
| CDY20501 | Canola | cytosol | 55.05 | 54.32 |
| Bra005000.1-P | Field mustard | cytosol | 54.88 | 54.06 |
| CDX93223 | Canola | cytosol | 53.7 | 53.98 |
| CDX74819 | Canola | cytosol | 54.38 | 53.83 |
| CDX93225 | Canola | cytosol | 53.37 | 53.37 |
| CDY07041 | Canola | cytosol | 53.03 | 53.21 |
| CDY07040 | Canola | cytosol | 53.7 | 52.55 |
| Bra017045.1-P | Field mustard | cytosol | 53.37 | 52.22 |
| Bra017044.1-P | Field mustard | cytosol | 52.86 | 51.99 |
| CDY60996 | Canola | endoplasmic reticulum, golgi | 55.56 | 46.94 |
| TraesCS5B01G280100.1 | Wheat | cytosol | 33.0 | 34.27 |
| TraesCS2B01G302900.1 | Wheat | cytosol | 30.47 | 31.53 |
| TraesCS7B01G081200.1 | Wheat | cytosol | 31.82 | 30.24 |
| TraesCS1B01G119100.1 | Wheat | cytosol, peroxisome, plastid | 29.29 | 29.54 |
| TraesCS6B01G345800.1 | Wheat | plastid | 30.47 | 28.06 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.7.2.1.1 | Gene3D:3.80.10.10 | InterPro:F-box-like_dom_sf | GO:GO:0002213 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:2000022 | InterPro:IPR001611 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF13516 | PANTHER:PTHR43944 |
| PANTHER:PTHR43944:SF3 | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | EnsemblPlantsGene:TraesCS3B01G399200 | EnsemblPlants:TraesCS3B01G399200.1 |
Description
No Description!
Coordinates
chr3B:+:630363997..630367153
Molecular Weight (calculated)
66364.7 Da
IEP (calculated)
6.970
GRAVY (calculated)
-0.005
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGEVPEPRR LSRALSFGVP DEALHLVMGY VDAPRDREAA SLVCRRWHRI DALTRKHVTV AFCYAADPSR LLARFPRLES LALKGRPRAA MYGLISDDWG
101: AYAAPWVARL AAPLECLKAL HLRRMTVTDD DVATLIRSRG HMLQELKLDK CSGFSTDALR LVARSCRSLR TLFLEECVIT DEGGEWLHEL AVNNSVLVTL
201: NFYMTELKVV PADLELLAKN CKSLLSLKIS ECDLSDLIGF FEAANALQDF AGGSFNEVGE LTKYEKVKFP PRVCFLGLTF MGKNEMPVIF PFSASLKKLD
301: LQYTFLSTED HCQLISKCPN LFVLEVRNVI GDRGLEVVGD TCKKLRRLRI ERGDDDPGLQ EEQGGVSQLG LTAVAVGCRD LEYIAAYVSD ITNGALESIG
401: TFCKNLYDFR LVLLDRQKQV TDLPLDNGVR ALLRSCTKLR RFALYLRPGG LSDIGLDYIG QYSGNIQYML LGNVGESDHG LIRFAIGCIN LRKLELRSCC
501: FSEQALSLAV LHMPSLRYIW VQGYKASPAG LELLLMARRF WNIEFTPPSP EGLFRMTLEG EPCVDKQAQV LAYYSLAGQR QDCPDWVTPL HPAA
101: AYAAPWVARL AAPLECLKAL HLRRMTVTDD DVATLIRSRG HMLQELKLDK CSGFSTDALR LVARSCRSLR TLFLEECVIT DEGGEWLHEL AVNNSVLVTL
201: NFYMTELKVV PADLELLAKN CKSLLSLKIS ECDLSDLIGF FEAANALQDF AGGSFNEVGE LTKYEKVKFP PRVCFLGLTF MGKNEMPVIF PFSASLKKLD
301: LQYTFLSTED HCQLISKCPN LFVLEVRNVI GDRGLEVVGD TCKKLRRLRI ERGDDDPGLQ EEQGGVSQLG LTAVAVGCRD LEYIAAYVSD ITNGALESIG
401: TFCKNLYDFR LVLLDRQKQV TDLPLDNGVR ALLRSCTKLR RFALYLRPGG LSDIGLDYIG QYSGNIQYML LGNVGESDHG LIRFAIGCIN LRKLELRSCC
501: FSEQALSLAV LHMPSLRYIW VQGYKASPAG LELLLMARRF WNIEFTPPSP EGLFRMTLEG EPCVDKQAQV LAYYSLAGQR QDCPDWVTPL HPAA
001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI
Arabidopsis Description
COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.