CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94317
KRG96405
KRG97777
KRH03236
KRH10462
KRH14993
KRH23810
KRH31107
KRH33363
KRH39044
KRH39972
KRH43983
KRH54335
KRH54336
KRH57122
KRH57651
KRH63609
KRH68142
KRH73146

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39940.1	KRG97777	AT2G39940.1	12724535
AT2G39940.1	KRH14993	AT2G39940.1	12724535
AT2G39940.1	KRH31107	AT2G39940.1	12724535
AT2G39940.1	KRH73146	AT2G39940.1	12724535
AT2G39940.1	KRH39044	AT3G17860.1	17637675
AT2G39940.1	KRH39044	AT3G17860.1	18547396
AT2G39940.1	KRH39044	AT3G17860.1	19309455
AT2G39940.1	KRG96405	AT4G02570.1	12172031
AT2G39940.1	KRH68142	AT4G02570.1	12172031
AT2G39940.1	KRG96405	AT4G02570.1	12445118
AT2G39940.1	KRH68142	AT4G02570.1	12445118
AT2G39940.1	KRG96405	AT4G02570.1	12724535
AT2G39940.1	KRH68142	AT4G02570.1	12724535
AT2G39940.1	KRH10462	AT4G14110.1	12724535
AT2G39940.1	KRH33363	AT4G14110.1	12724535
AT2G39940.1	KRH43983	AT4G14110.1	12724535
AT2G39940.1	KRG94317	AT5G14250.1	12724535
AT2G39940.1	KRH57651	AT5G14250.1	12724535
AT2G39940.1	KRH23810	AT5G42970.1	12724535
AT2G39940.1	KRH39972	AT5G42970.1	12724535
AT2G39940.1	KRH03236	AT5G63110.1	12445118
AT2G39940.1	KRH54335	AT5G63110.1	12445118
AT2G39940.1	KRH54336	AT5G63110.1	12445118
AT2G39940.1	KRH57122	AT5G63110.1	12445118
AT2G39940.1	KRH63609	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31107	Soybean	cytosol	97.46	97.46
KRH14993	Soybean	cytosol	82.54	85.74
KRH73146	Soybean	cytosol	83.56	84.42
VIT_13s0019g03380.t01	Wine grape	cytosol	76.95	75.92
Solyc05g052620.2.1	Tomato	cytosol	72.03	70.48
Bra000156.1-P	Field mustard	cytosol	68.98	68.98
AT2G39940.1	Thale cress	cytosol	69.15	68.92
CDY24941	Canola	cytosol	68.81	68.81
Bra005000.1-P	Field mustard	cytosol	68.81	67.33
CDY20501	Canola	cytosol	68.64	67.28
CDX74819	Canola	cytosol	68.31	67.17
GSMUA_Achr6P33630_001	Banana	cytosol, mitochondrion, nucleus	65.42	66.21
CDY07041	Canola	cytosol	64.75	64.53
GSMUA_Achr9P03690_001	Banana	cytosol	65.59	64.18
CDX93223	Canola	cytosol	64.24	64.13
GSMUA_Achr5P28930_001	Banana	cytosol	60.85	64.11
CDX93225	Canola	cytosol	63.73	63.3
Bra017044.1-P	Field mustard	cytosol	64.58	63.08
Bra017045.1-P	Field mustard	cytosol	63.05	61.28
CDY07040	Canola	cytosol	62.88	61.12
TraesCS3A01G367500.1	Wheat	cytosol	56.1	59.43
Os05t0449500-01	Rice	cytosol	59.83	59.13
Os01t0853400-01	Rice	cytosol	59.49	58.99
TraesCS1D01G278400.1	Wheat	cytosol	59.15	58.95
HORVU4Hr1G060950.3	Barley	cytosol	58.47	58.87
TraesCS4A01G091200.1	Wheat	cytosol	58.31	58.7
TraesCS4D01G214200.1	Wheat	cytosol	58.31	58.7
TraesCS1A01G279100.1	Wheat	cytosol	58.81	58.61
HORVU3Hr1G085210.2	Barley	cytosol	58.98	58.59
Zm00001d012338_P001	Maize	cytosol	59.15	58.56
TraesCS3D01G360400.2	Wheat	cytosol	58.98	58.49
TraesCS1B01G288100.1	Wheat	cytosol	58.64	58.45
TraesCS3B01G399200.1	Wheat	cytosol	58.81	58.42
TraesCS4B01G213500.1	Wheat	cytosol	57.97	58.36
Os03t0265500-01	Rice	plasma membrane	57.97	58.06
Zm00001d042833_P001	Maize	cytosol	58.81	58.03
CDY60996	Canola	endoplasmic reticulum, golgi	68.81	57.75
GSMUA_Achr8P02350_001	Banana	cytosol	16.78	57.56
HORVU1Hr1G073230.1	Barley	cytosol	57.63	57.53
Zm00001d010082_P001	Maize	cytosol	58.14	57.26
Zm00001d038273_P001	Maize	cytosol	58.14	57.26
EES18318	Sorghum	cytosol	58.14	57.26
EES01769	Sorghum	cytosol	57.8	57.21
EER95129	Sorghum	cytosol	57.29	57.19
Zm00001d028543_P001	Maize	cytosol	56.61	56.51
Zm00001d047848_P001	Maize	cytosol	56.27	56.18
KRH06858	Soybean	cytosol	32.37	33.39
KRG94665	Soybean	cytosol	32.37	33.39
KRH68108	Soybean	cytosol	32.03	32.25
KRG96377	Soybean	cytosol	32.03	32.2
KRH31921	Soybean	cytosol	31.53	31.79
KRH71533	Soybean	cytosol	31.36	31.62
KRH70053	Soybean	cytosol	30.51	31.41
KRH08397	Soybean	cytosol	30.51	31.41
KRH49941	Soybean	cytosol	30.68	31.31
KRH41935	Soybean	cytosol	30.68	31.26
KRH62206	Soybean	cytosol	29.66	30.02
KRH52925	Soybean	cytosol	29.49	29.64
KRH72427	Soybean	cytosol	31.02	29.05
KRH16819	Soybean	cytosol	30.85	28.44

Protein Annotations

EMBL:ACUP02010817	EnsemblPlants:KRG97777	EnsemblPlantsGene:GLYMA_18G030200	EntrezGene:100779171	Gene3D:1.20.1280.50	Gene3D:3.80.10.10
InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR43944	PANTHER:PTHR43944:SF6	ProteinID:KRG97777	ProteinID:KRG97777.1
SEG:seg	SUPFAM:SSF52047	UniParc:UPI0001CA999F	UniProt:I1MZ51	MapMan:11.7.2.1.1	:

Description

hypothetical protein

Coordinates

chr18:+:2321931..2326093

Molecular Weight (calculated)

66970.2 Da

IEP (calculated)

6.408

GRAVY (calculated)

-0.111

Length

590 amino acids

Sequence
(BLAST)

001: MTEERNVRKT RVVDVVLDCV IPYIDDPKDR DAVSQVCRRW YELDSLTRKH VTIALCYTTT PARLRRRFPH LESLKLKGKP RAAMFNLIPE DWGGHVTPWV
101: KEISQYFDCL KSLHFRRMIV KDSDLQNLAR DRGHVLHALK LDKCSGFTTD GLFHIGRFCK SLRVLFLEES SILEKDGEWL HELALNNTVL ETLNFYLTDI
201: AVVKIEDLEL LAKNCPNLVS VKLTDCEILD LVNFFKHASA LEEFCGGTYN EEPERYSAIS LPAKLCRLGL TYIGKNELPI VFMFAAVLKK LDLLYAMLDT
301: EDHCMLIQRC PNLEVLETRN VIGDRGLEVL GRCCKRLKRL RIERGDDDQG MEDEEGTVSH RGLIALSQGC SELEYMAVYV SDITNASLEH IGTHLKNLCD
401: FRLVLLDHEE KITDLPLDNG VRALLRGCDK LRRFALYLRR GGLTDVGLGY IGQYSPNVRW MLLGYVGESD AGLLEFAKGC PSLQKLEMRG CLFFSERALA
501: VAATQLTSLR YLWVQGYGVS PSGRDLLVMA RPFWNIELIP SRKVATNTNP DETVVVEHPA HILAYYSLAG QRSDFPDTVV PLDTATCVDT

Best Arabidopsis Sequence Match ( AT2G39940.1 )
(BLAST)

001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI

Arabidopsis Description

COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.